Coregonus clupeaformis (lake whitefish): 121569540
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Entry
121569540 CDS
T08357
Name
(RefSeq) integrator complex subunit 1-like isoform X1
KO
K13138
integrator complex subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121569540
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
121569540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
INTS1_INTS2-bd
INTS1_RP2B-bd
INT1_R3
INTS1_R4
CBP1_cbp8
UNC45-central
HTH_RNase_II
Cnd3
Motif
Other DBs
NCBI-GeneID:
121569540
NCBI-ProteinID:
XP_041736525
LinkDB
All DBs
Position
7
Genome browser
AA seq
2207 aa
AA seq
DB search
MMNRPKPTAIRRPSAAKPSGHPPPGDFIALGSKSGGESKAPAVLLKPASTLPTDRKRETS
SSLPSSSGLSGLVKRPKLSSTPPVSALGRLADVAAVDKRAISPSIKEPSVVPIEVPPAVL
LDEIENAEQDGNDDRIEGVLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNVFATEGIIE
ALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVD
SSHCKNFVDNIQTAFSTKMPPKSMLLQLQTDTGRSGGDISAGSSPHPSTPDEDDSQTELL
IAEEKLSPEDDGQVMPRYEELSESVEDYVLDVLKDQLNRRQPMDNVSRNLLRLLTATCGY
KEVRLMAVQRLEMWLQNPKLTRPAQDLLMSLCMNCNSHGADDMEVISNLIKIRLKPKVIL
NHYMLCVRELLNAHRDNLGTMVKLVIFNELSNARNPNNMQVLHTLLQHSPEQAPKFLAMV
FQDLLTNKDDYLRASRALLREIIKQTKHEINFQSFCLGLMQERKEATYVDMEFKERFVIQ
VTDLLTCSMMLGITAQVKEAGVAWDKGEKKNLDGLRSFQNNIAAIQRDAVWWLHTVVPTI
AKVPSKDYIHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPLLEDTLMRILVIG
LSRDLPLGPADAMELADHLVKRAAGVQSDGTTSATAMDLDVLRVERIQLIDAVLNLCTYH
HPENIQLPAGYTPPNLAIATLYWKAWLLLLVVAAFNPQKIGLAAWDGYPTLKMLMEMVMT
NNYSYPPCTVADEETKTEMINRELQVSQREKQEILAFESHLAAASTKQTITESNSLLLSQ
LTSLDPQGPPRKPPPAVQEQVKSLNQSLRLGHLLCRSRNPDFLLNIIQRQASSQSMPWLA
DLVQSSEGSLDVLPVQCLCEFLLHDAADDNLPIEDDEEGESKEQRAKKRQRQQKQRQLLG
RLQDLLLGPKADEQTTCEVLDYFLRRLSSSQVASRVLAMKGLSLVLTEGGLKDGEERDQP
MEEDSRDAELLPGYQWLLQDLPKLPLFDSVRGMTSTALQQAIHMETDPQTISAYLIYLSQ
HAPVEEQASHNDLALDVARLIVERSTIMNSLFSKHSCRPESDAVLSALISIFSSYIRRMR
KTKEGEDLYSWSESQDQVFLRWTTGETATMHILVVHAMVILLTLGPPKEESDFFNLLDIW
FPDKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVARLVDAALQDLEPQQLLLFVQSFGI
PVSSMSKLLQYLDQAVSHDSQTLEQNIMDKNYMAHLVEVQHERGATGGHTFHGLLSSSLP
PRRDSTEVNRAKVTVETPSCSLKMRANQIPVIGPEDDLTGMLLQMFPLKVDHRRPSTPPR
PLSLALQQALAQELVRARQGGHPQQGGVAVRLLQALAALLSSAHVGALVMAMNRSHALSC
PILRQLHLYQRLVSQDVAFSSLFFKAVMEMMTWLENSAVDAGPLRALLKSFAGQYSQKHR
LTDVRTGFLHLAEALVYRRDSEVAVRAIIATLKAGERCNAEPELIGKVLQGLVEGKSPYL
EELLSLLMTIGTETGTGSTTAGPVAMVMALLLQETEEQAVKIEVDVNNSSSEVTKTGSSS
GLLVDWLGLLDPEVTSVCPDLQRKLLFALNKGKGTPSYRPYLLALLTHQSNWTTLHQCIS
ALLSKQQDQRLDPSSALDFLWACSHIPRIWQGRDQKTPQKQTDLFVLRLNPEEIISLVDL
IMSESELNSRGDSSPTANTPGNAKSTLDHTSCSLIQSRLPLLQSCCHGDLERVKKVSEYL
INCTKKWGDSVMSKRCQNLLLQLYLHFPEVIQHVTLPDATLSSEGAADGTTCKRDVLVHR
LVTLLGDTGDTKSAENRMSDANLACRKLAVSHPVLLLRHLPMIGALLHGRIHLNFQEFRS
QNHLTFFSNVLSILELLQPLVFHSEHQRALQDCLLSFMKILQNLRRPRMHPLAVFSKFVQ
FIQKYITHDAAAAIPYLQKHSDILQGLSSEHPDLLLKSLLAGLTLPVKTGSSDSSAEDRD
DESSSGSLPMVSISASVPLTAADMTKYLKKISRGEAIEDVLEVLTEVEDKSKRNPEIIQH
FTNDLQRLMSSTEELCRNMAFSLALRCIQNNPCTAADFLPTFMYCMGSGNFDVVQTALRN
LPEYVLLCQEHADILLHKAFLVGIYGQIDTSSMISESMKVLHMEATT
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcgtcccaagcctacagcgatcaggcgtcctagtgctgcaaaaccctcaggt
caccctcctccaggagatttcatagcattggggtcaaagagtggcggagagtccaaagca
cctgcagttctccttaagccagcgtccaccttacccactgaccgcaaacgagagacttcc
tcgtcacttccttcctcctctggcctgtccggcctcgtgaagcgccccaagctctcctct
acccctcctgtcagcgccctgggacgactggctgatgtagcagcagtggacaaaagggct
atatcgccttcgatcaaggagccctcagtggtgcccatagaagtccccccagcagtgctc
ctggatgagattgagaatgcagagcaggatggaaatgatgatcgcattgaaggggtgctc
tgtggagctgtcaaacagctgaagatgaaccgggccaaacctgacataacactgtacctc
agcctcatgttcctggccaagattaagcccaatgtctttgccactgaaggcattattgag
gccttgtgcagtcttcttcgccgggatgcctccatcaacttcaaagccaagggcaacagt
ctggtgtctgtgctagcctgcaacctgctgatggcagcctatgaggaggatgagaactgg
ccagagatctttgtcaaagtgtacattgaggactctttgggggagcgaatttgggtggac
agttcccattgtaagaattttgtggacaacatccagactgccttcagtaccaaaatgccc
ccaaagagtatgctgctgcagttgcagactgacactggccgctccggtggggatatcagt
gcagggagcagtcctcacccctccaccccagatgaggatgacagccagactgaattgctg
attgctgaggagaaacttagccctgaagatgatggacaagttatgccaaggtacgaggag
ctgtctgagagtgtggaggactatgttctagatgtcctgaaggaccagttgaaccgcagg
cagcccatggacaatgtatcccgtaacctgctgcgtctgctcactgccacctgtggctac
aaggaggtgcggcttatggctgtgcagaggctggagatgtggctgcagaacccaaagctg
acccgtccagctcaggaccttctcatgtctctctgtatgaactgcaactcccatggagcg
gacgacatggaggtgatctccaacctcatcaagatccgcctgaaacctaaagtcatcctc
aatcactacatgctctgtgtcagggagctactgaatgcacacagagacaacctgggaact
atggtgaagctggtgatcttcaacgagctgtccaatgccaggaaccccaacaacatgcaa
gtccttcacacactgctccagcacagcccagagcaggcccctaagttcctggccatggtg
ttccaagacctgctaaccaataaggatgattacctgcgtgcctcacgagcattgctgaga
gagatcatcaaacagaccaagcacgagatcaacttccagtccttctgcctgggtctgatg
caggaaaggaaggaggccacctacgtcgacatggagttcaaagaacgctttgtgatccag
gtgacagacctgctcacgtgctccatgatgctgggcatcacagctcaggtcaaggaggct
ggcgttgcatgggacaaaggagagaagaagaatctggatggtctgagatcctttcagaat
aatatagctgccattcagagggatgctgtgtggtggcttcacactgttgttcccactatt
gccaaagtgccatccaaggactatatacactgtcttcacaaggtgcttttcacggagcaa
ccagagacctactacaagtgggataactggcctcctgagagcgacagaaatttcttcctg
cggctatgctctgaagtgcctctgctggaggacactctgatgcgtatcctagtcatcgga
ctgtcccgagacctgcccctgggcccggccgacgctatggagctggcggaccacctggtg
aagagggcagccggagtccagtccgatggtacaacatctgcaacagcaatggatctggat
gtgttgagagtggagaggatccaactgattgatgcagtgctgaacctgtgcacctaccac
cacccagagaacattcagctgcctgcagggtatactcctccgaacctggcgatagccaca
ctctactggaaggcgtggctcctgctacttgtggtggcggctttcaatccacagaaaata
ggcttggctgcctgggatggctatcccacactgaaaatgctcatggagatggtcatgaca
aataactactcctaccctccatgcacggtggctgatgaggagaccaagaccgagatgatc
aacagggagctgcaggtgtcccagagagagaagcaagagatcctggccttcgagagccac
ctggcagctgcctccaccaagcagaccatcacagagagcaacagcctgctgctgtcccag
ctcaccagtctggacccacagggtccccctcgcaaaccccctcccgcagtccaggagcag
gtgaagagccttaaccagtcccttcgcctgggtcacctactctgccgctctcgcaaccct
gacttcctgctcaacatcatccagagacaggcctcctctcagtcaatgccctggctggct
gacctggtgcagtcaagtgaggggtccttggacgtgctgcccgtgcagtgcctgtgtgaa
ttcctgcttcacgatgctgcagatgacaacttgcccatcgaggatgacgaggaaggagag
agcaaagagcagagagccaagaaaagacaaagacaacagaagcagaggcagctccttgga
cggctgcaggatctgctgttgggtcctaaagctgacgaacagaccacatgtgaggtgttg
gactacttcctgcgccgcctcagctcttctcaagtggcatcaagagtcctggctatgaag
ggtctgtctctggtgctgactgaggggggtctgaaggatggagaggagagggaccagccc
atggaggaggactccagagatgctgagctgctgccagggtaccagtggctcctgcaggac
ctccccaagctgcccctgttcgacagcgtccggggcatgacctccaccgctctgcagcaa
gccatccacatggagaccgacccacagaccatcagcgcctacctcatctacctgtcccag
catgcaccagtggaggagcaggcatctcacaacgacctcgctctggatgtggcccgtctg
attgtcgagcgctccaccatcatgaacagcctgttctccaagcactcctgccggcccgag
tcagacgctgtgctctcagccctcatctccatcttctccagctacatcaggaggatgagg
aagaccaaggagggagaggacctctacagctggtcagaatctcaggaccaggtgtttctg
cgttggaccacaggggagacagccaccatgcatattctggtggtccatgccatggtcatt
ctcctgacactggggccacccaaagaggagagtgacttcttcaacctcctggacatctgg
ttccccgacaagaaacccctccccaccgccttcttggtggacacatccgaggaggccctg
ctgcttcctgattggttgaagctgaggatgatccggtcagaggtcgcacgattggtggat
gcagcgctgcaggatctggagccccagcagctgctgctgtttgtccagtcgtttggcatc
cccgtgtccagtatgagtaaactgctgcagtacctggaccaagccgtgtcccacgactca
cagacactggaacagaacatcatggacaagaactacatggctcatctggtggaggtgcag
catgagcgaggtgccacaggggggcacactttccacgggttgctcagctcctctctccct
cctcgcagagatagtactgaggtgaacagggccaaagttactgtggaaactcctagttgc
tccttgaagatgagagccaatcagatcccagtgattgggcctgaggatgacctcaccggc
atgttgcttcagatgttccctctgaaggtggaccaccgcaggcccagcacccctccccgg
cccctctccctggccctgcagcaggctctggcccaagagctggtgcgtgccagacagggg
gggcacccccagcagggtggggtggcagtgcgtctcctacaggccctggctgccctgctc
agctctgcccacgttggggccctcgtcatggccatgaaccgcagccatgccctgtcctgc
cccatactgcgccagctgcacctctaccagcgtctggtgtcgcaggacgtggccttctcc
tctctcttcttcaaggctgtcatggagatgatgacatggttggagaactcggccgtggac
gcggggccgctacgggccctgctcaagtccttcgctggacagtattcccagaagcaccgg
ctcactgatgttcgtacaggcttcctccacctggctgaggccctggtttatcggagggac
tctgaggtggccgtgagagccataatcgccacactgaaggcaggggagagatgtaacgca
gagccagaactgataggcaaagtgttacaggggctagtggaggggaagtctccatatttg
gaggaactgctgtccttgctaatgaccattggaacagagacggggaccggctctaccacc
gcaggccctgttgccatggtgatggcactgcttctccaggagactgaagagcaagccgtg
aaaatagaggtggatgtaaacaacagcagctccgaggtgacaaagaccgggtccagctca
gggctgcttgttgattggctgggacttcttgaccctgaggtcacatctgtgtgtccagac
cttcagcggaagctgctttttgctctcaacaagggtaaaggaactccctcctacagacca
taccttctggcgttgctgacccatcagtccaactggacaactcttcatcagtgcatcagt
gctcttctcagcaagcagcaagaccagcgactggacccatcttctgctctggacttcctg
tgggcctgcagtcacatccctcgtatctggcagggccgggaccagaagactccacagaaa
cagacagatttgtttgtcctgcggttgaacccggaggagattatcagtctggtggacctc
atcatgtcagagtctgagctgaacagccgcggtgactcctcgcccactgccaacaccccc
ggcaacgccaagagcaccctggaccacacctcctgctccctcatccagtcacggctgccc
ctgctccaaagctgttgccatggcgacctggagagagtgaagaaagtatcggaatacctc
atcaactgcacaaagaaatggggagacagtgtgatgagtaagcggtgccagaacctcctg
ctccagctctacctgcacttcccagaggtcatccagcacgtgaccttacctgacgcaact
ctgagcagcgagggggccgccgacggcaccacatgcaagcgcgacgtcctggttcaccgt
ctggtcacgttgctaggcgatacaggagacaccaagtcggctgagaaccggatgtcagac
gctaacctggcctgcaggaagctggctgtgtcccaccctgtcctccttctcagacacttg
ccgatgatcggagcacttctccacggacgcatccacctcaacttccaggagttccggagc
cagaaccacctgacgttcttcagcaacgtgctgtccatcctggagctgctgcagccgtta
gtgttccacagtgaacaccagagggcgctgcaggactgcctgctctctttcatgaagatc
ctgcagaacctcaggagacctcgtatgcatccgttggccgtcttcagtaaatttgtgcag
ttcattcagaagtacattacccacgatgcagcagcagccattccctatctacagaagcat
tccgatatcctgcaggggctctcgtcagagcaccctgacctgctgctcaagtccctgcta
gctggcctcaccctgcctgtgaagactggctcctctgacagctctgctgaggacagagat
gatgagtcgtcctctggttccctgcccatggtcagtatctcagcctccgttccactgact
gcagctgacatgaccaagtacctgaagaagatctccaggggagaagccatagaagatgtt
ctggaagttctgaccgaggtggaggacaagtccaagaggaatcctgagatcattcagcac
ttcactaatgacctgcagagactgatgagttctactgaggagttgtgtcgtaacatggcc
ttcagcctggccctgcgctgcatccagaacaacccatgcacggcagcagacttcctgccc
accttcatgtactgtatgggcagtgggaactttgacgtggtgcagacagcgcttaggaac
ctgccagaatacgtgctgctctgtcaagagcatgcagacatcttactccacaaggccttc
ttggtggggatctatgggcagattgacaccagctctatgatctctgagtccatgaaggtc
ctgcacatggaggcaacaacgtga
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integrated database retrieval system
