Coregonus clupeaformis (lake whitefish): 121569882
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Entry
121569882 CDS
T08357
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121569882 (smchd1)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121569882 (smchd1)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121569882 (smchd1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121569882 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
SMC_hinge
HATPase_c_3
HATPase_c
ATP-synt_D
PsiF_repeat
SOGA
Motif
Other DBs
NCBI-GeneID:
121569882
NCBI-ProteinID:
XP_041737103
LinkDB
All DBs
Position
7:complement(17566387..17607379)
Genome browser
AA seq
2016 aa
AA seq
DB search
MAESGDVTTSAIANSCRTQTLQSKNGVNGSDKPHKRVVVFDCRPERDVDATERVLDINGL
DFNDFLQFVSKEFAIPSNETFVLTTTDRKGIDLDRYEELQQGNTLHLLQSEDQTLPAATK
EHIVFLPHYDTLVQSGMYEYYASEGQKSLPYAFAELIDNALSATSHNAGVRTIDIRLLFD
ESLGKHAVVIMDNGCGMTSKQLNNWAVYRLSKFSRETGTFSSDHAGYVRPDPVPRSLNSD
ISYFGVGGKQAVFYIGQSTRMITKPAGSPDVHELIISKEEFERKERNKEDIYSGFIRNRK
MGDSSHVSDDEERFLHGLISEEVGKDSFTAVVVTGVQPEHITFLKQDFHLWTRELAHLYH
YYIHGLNGNDMKASYRNSDCVSNIDIQISLLEKFPKIPRMVNLREIDNDMQTLYINASAD
TFEFKACTDNEGTVEGVLRYHPFLYDRETYPEDPYAIQATEEDDEDSIVLNQARGKRPIF
ECFWNGRLIPYTTVSEFDWCAWPKKTGTVPAECYSRFSGALFTNDRFQVSTNKLTFMDLE
LQLKNKETLFTRIVNGQEQRVKIQKEFHQWLKTCHEKWDKQVKFRGFKGTIKRTDVATKK
MQSPWATFSSIEWDGRMYKAGQYVKSQKTQPIFFGSVIQFLLYGDHEGDVYATGGQVKVA
MEPKALYNDIKTIPISKIDRVITNAAIKKSIDDELAKLPDELKVTWPEGNPWTQNDVRPA
GTPLGPLHVEILNKKGESISRIPSATQNASRKALSIELKVVWHSPNGDVETNSHIAAHSA
KWAFWFRTMENLNKMGKYTLHLNTVLNVNERNSTVWAGNQLPNHTLDFSITEGSAERFVV
GTVTTLLHVGVPFHIPLELLDEYGHPARPPPNLKPLLECSALEVSYEGAASRGTIFTIRG
VRARGAVQNYQNKTHDLKVVLPGLKQDSQTLKISLLPGNPDSLKVKQEDSITVENGTSVS
FDVEVHDEAGNVTAHPKLIVCCQLQGIPGSSSMVAVDCSNTGAGTLVLKPITFKNITGDQ
TVKATFDIPSQKSVAPVQRDLRVVPSTRVSRLEVYSQEDVDSLVDSMVLRDKEKIDWTAG
DLLENLHYRLYDEGGREVPLSEEMAQRIKVNWTADVSVEELAQGKLPNVLVPSLVKEEHF
YQVSYMEQLVSVDTSFTIVPRPDEPKHMKATLSESTVRMGEVLSGKIYLQLTDQYGNKTQ
MLTATCVDSLTVDAEGLDKASLVFTWQESTHSILVTGVRFNPGFPGIRELNFTWRDFAEH
VTIKLTAGVPAQLKLVDGPQEPLQVLNEQGIQTPFLLQLFDEWGNPSPDQRVVVMLKTST
PALKVKSSVNSQPIDKDGKASFVVDHVSGPKGEYALEFRGSFNTKPIHGPSVKLTIIPDP
NKPIKLVVEYNTNSVFHAGGTLTVFSVSVMSEEGSTIKNLNPANLSMLLWKGEPSGASRP
PSGAAQLKCSKPMVDEKEDSFHFRDKVIPDHVGKYTIQFVLCVDKTKGLWSHQYVINVVP
NDPVKLAPDLQPPTPVVVNNNVLASRTLVEGMSLKLMDIYNNPAGLELSGKVVVTIKSSK
GSSDKDLPLFEGKAKSLQFSLANGEAHITNMSIMENSPGQDGNEYVLLFRPSVPGFGPKN
PLAAFELPFRFYNDVENRKQMSELTKKKDQLKQTVEIYKSLFDTNRQLIAELKNQVCNAA
NKESHLKSELRKNSMDVAQLSSIPAIDELISQKTADTEKMKLQTRRVCSMPDPFRGNPDV
LGKIGHLALVEDDDVATVISWHLLGDIDCVVTMTTVAARKIYDDTQGRQQVMPLDTVFWR
NNSSRPLPHIRKGQASFRPIGNPVFARDLLIFPENAENCQIVFGNLLGDTILTDDLDSAN
HYRKGVVQSKMPCPTLLTRQGERIRSNGKFGGLQNKAPPIERLRGQVFGAPLPKEYHTFM
GQIDLLQQYRLAMEKSRQVKEDFDCHMQYLKSPEMVQKEEEMDEQEKQLKDIETKLASTP
VRTPSAIGVKRSLDKAGESSGMVTKRTRRKLLKQDY
NT seq
6051 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtcgggagatgtgacaacgtctgccattgccaatagttgtagaacacaaact
ttacagagtaaaaatggagttaacgggtctgataaaccacataaaagagtggtagtattc
gactgtcgcccggaaagagacgtcgatgcaacggagagagttctggacataaatggcttg
gacttcaacgacttccttcaatttgtatcaaaggaatttgccattccttccaacgaaacg
tttgtcttgacaacaactgacagaaaaggaatagatttggacagatatgaggaacttcaa
caaggaaacactctccacctgttgcagagcgaggaccagaccctgcccgcagcaactaag
gaacacattgtgttcctccctcactacgatacactggtccagagtggcatgtatgagtac
tatgctagtgagggccagaagtctttaccgtatgcctttgcagaactaatcgacaatgca
ctgtcagcgacatcgcacaacgcaggagtgaggaccatagacatccgattgctgtttgat
gagtccttggggaaacatgcagtggttatcatggacaacggctgtggaatgacctccaag
cagcttaataactgggctgtgtacaggctctccaaattcagcagggaaaccggcacgttt
tcaagtgatcacgctgggtatgttcgtcctgatccagtccctcgcagtctcaacagtgat
atatcatattttggagtaggagggaaacaagcagtgttctacattggacagtcaaccagg
atgatcaccaaaccagcgggctccccagatgtccatgaactcatcatttcaaaagaagag
tttgagaggaaggagcggaacaaggaagatatttatagtggttttatcagaaaccggaag
atgggtgactcgtcccacgtgagcgacgacgaggagcgcttcctccacgggctgatctct
gaggaggtgggaaaggacagcttcacggccgtggtggtgacgggggtccagcctgaacac
atcaccttcctcaagcaggactttcacctgtggactagagaactggcccacttgtatcac
tattacattcacggcctaaatgggaatgacatgaaagcctcctaccgaaactctgattgt
gtctccaacattgacattcagatctctctgctggagaagttccccaagatccctcgcatg
gtgaacctcagagaaatcgacaacgacatgcagacgctctacatcaacgcatcggctgac
acgttcgagttcaaggcctgcacagacaatgaaggaacagtggagggggtcctgaggtac
caccccttcctctatgacagggaaacctaccctgaagacccttacgccatacaagctacg
gaagaggatgatgaggacagtatcgtcctgaaccaggccaggggaaagaggcccatattt
gagtgtttttggaatggacgtctcatcccatacaccactgtatctgagtttgactggtgc
gcatggcccaagaagactgggacagtgcctgcagagtgttacagcaggttctcaggggcg
ctgttcaccaacgacaggttccaggtcagcaccaacaagctcactttcatggacctggag
ctgcagctaaagaataaggagaccttattcacccgcatcgtcaatggccaggaacaaagg
gttaagatccagaaggagtttcaccagtggctgaagacctgccacgagaagtgggacaag
caagtgaagttcagaggcttcaagggcaccatcaaacgaactgacgtggccaccaagaag
atgcaatctccttgggctaccttctcctccatcgagtgggacggtagaatgtacaaagct
ggccaatacgtgaagtctcagaaaacacagcccatcttctttggctccgttattcagttc
ctactgtatggcgatcacgagggagatgtctacgccacaggggggcaggtgaaggtggcc
atggaaccaaaggcgctgtacaatgacatcaagacaatacccatctccaaaatcgacagg
gtgattaccaatgcagccatcaagaagagcattgatgacgaactagccaaactcccagac
gagcttaaagtgacctggccggagggcaacccctggacccagaacgatgtccggccagca
ggcactccactaggacctctccatgtggaaattctcaacaagaaaggagagtcgatatcc
aggataccatcagccacacaaaacgcatcacggaaagcactttcaatcgaactaaaagtt
gtttggcattctcctaatggtgatgtggagaccaactctcacattgcagcacattcagcc
aagtgggcattctggttcagaaccatggagaacctgaacaagatggggaagtacactctg
cacctgaacacagtactcaatgtcaatgagcgcaactctaccgtctgggctgggaaccag
cttcccaaccacacactggacttctccattactgagggcagtgcagagaggtttgtggtg
ggtacagttaccaccctgctccatgtgggggtgcctttccacatcccactggagctactg
gatgaatacggtcaccctgctcgcccccctcccaacctcaagcccctcctggaatgcagt
gccctggaagtgagttatgagggggcggcctctagagggaccatttttaccatccgaggc
gtcagagccagaggggcggtgcagaactaccagaacaagacgcacgacttgaaagtggta
ctgcctggcctcaaacaggactcgcagactctgaagatcagccttctccctggtaaccca
gattcactcaaagtgaaacaagaggattcaatcactgtggagaatggaacctcggttagc
tttgatgtggaggtccatgacgaagccggaaacgtcacagctcacccgaaactgatcgtc
tgctgccagttgcaggggatccccggttcgtcctccatggtggctgtagactgcagtaac
acaggagctgggaccctggtgctaaaaccaatcaccttcaaaaacatcacgggagatcag
acggttaaagctacgtttgatattccaagtcagaagagtgtagccccagtccagagggat
ctgagggttgtccccagcacccgtgtatcacgtctcgaggtgtacagtcaggaggacgtg
gacagcctggtggactccatggtgctgagggacaaggaaaagatcgactggacggcaggg
gacctcctggagaacctccattatagactgtatgacgagggaggcagggaggtccctctg
tctgaagagatggcccagaggatcaaggtgaactggacggctgatgtgagtgtggaggag
ctggcccaggggaagctgcccaacgtgctggtcccatctctggtgaaggaggagcacttc
taccaggtctcctacatggagcagctggtgtctgtcgacacctccttcactatagtgccc
cgccccgacgagccgaaacacatgaaggccacgctgagcgagtcgaccgtgaggatggga
gaagtcctatcaggaaagatctacttacagcttacggaccagtatggcaataaaactcag
atgctgaccgcgacctgtgtggactctcttaccgtggacgcagagggtctcgacaaagca
tccctggtctttacctggcaggagagcacccactccatcttagtgacgggggtgcggttc
aaccccgggttcccaggtatcagagagctgaacttcacctggagggactttgcggagcat
gtgaccattaaattgacggccggggtccctgcacagctcaaactagtggacggaccacag
gagcccctgcaggtactgaatgagcagggcatccagacgcccttcctcctccagctgttt
gatgagtgggggaacccctctcctgaccagagggttgtggtgatgctgaagacttccact
ccagccctgaaggtgaagtcatctgttaattcacaaccgatagacaaagatggaaaagcc
agtttcgtagtagaccatgtgagcggtccaaagggggagtatgcgctggagttcagaggg
tccttcaacacgaagcccatccatggtccatctgtaaagcttaccattatccctgatcct
aacaaacctatcaaactggtggtggagtacaacacaaactcagtgtttcatgctggaggc
accctcacagtgttttcagtgtctgtgatgtcggaggagggcagcaccatcaagaaccta
aaccctgccaacttgtccatgctgttgtggaagggagagccatcaggggcgtcacggccc
ccctcaggggctgcccaactgaaatgcagcaaacccatggtagacgaaaaggaggacagt
tttcacttcagagacaaagtcatcccagaccatgttgggaagtacaccatccagtttgtg
ctgtgtgtggacaagactaaagggctgtggagtcaccagtatgtcataaatgttgtaccc
aacgatcctgtcaaattggccccagacctgcagccaccaaccccagtggtggttaacaac
aatgtccttgccagtcggactctggtggagggcatgtctctgaaattaatggatatctat
aataacccagcggggctggagctgagtgggaaggtggtggtgaccatcaagagctccaaa
ggctccagtgacaaagacctgcctctctttgagggcaaagccaagagcctgcagtttagc
ctggctaatggagaggcccacatcactaatatgtccatcatggagaacagtcctggtcag
gatgggaatgagtacgtcctgctcttcagaccttccgtcccagggtttggccccaaaaat
cccctggcagcgtttgagcttcccttccgcttctacaacgatgtggagaacaggaagcag
atgtctgaactgaccaagaagaaggaccagctcaaacagacagttgaaatctacaagagt
ctgtttgacaccaacaggcaactcatcgctgagctcaaaaatcaggtgtgcaacgccgcc
aacaaggagagtcacctgaaatcggagctcaggaagaatagcatggatgtagcacaactg
tcgtccatcccagcgatcgacgaactgattagtcagaagactgctgacacggagaagatg
aaactccagacgcggagagtctgctccatgcccgatcccttcaggggcaaccccgacgtc
ctgggaaaaattggccacctggcgctggtggaggacgatgatgtggccacagtcatctcc
tggcacctcttgggggacattgactgtgtggtcaccatgacaacagtggcggcgcggaag
atctatgacgacacccaggggaggcagcaggtcatgcccctggacacagtgttctggagg
aacaacagcagcagacccttgccccacataaggaaaggtcaggccagctttcgtcccatt
gggaaccctgtgtttgcccgagacctccttattttcccagagaatgcagagaactgccag
atagtgtttggcaacctccttggagacaccattttgacggatgacctggactctgctaac
cactacaggaagggggtggtccagagcaagatgccatgccccaccctcctgacccggcag
ggcgagaggatccgcagcaatggcaagtttgggggcttgcagaacaaagcccctccgata
gagagactgcgtggccaggtgttcggcgcacccctccccaaggagtaccacacctttatg
ggccagattgacctgctccagcagtaccggttggccatggaaaagagcagacaggtgaag
gaggactttgactgccacatgcaatacctgaagtcacctgagatggtgcagaaggaggag
gagatggatgagcaggagaagcagctcaaagacattgagacaaagcttgccagtactcca
gttcggacgccttctgccattggggtgaaacggagtcttgacaaggccggagaatcgtcc
ggtatggtaaccaagaggacgaggcggaagttattaaaacaggactattga
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integrated database retrieval system
