Coregonus clupeaformis (lake whitefish): 121570217
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Entry
121570217 CDS
T08357
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1-like isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121570217
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121570217
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
121570217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
121570217
NCBI-ProteinID:
XP_041737637
LinkDB
All DBs
Position
1:51113590..51266908
Genome browser
AA seq
1709 aa
AA seq
DB search
MAWIRWDLLFSIGLFISLAFVSTDQSGFRRYYVLQPGPSGTDRVHVSSISSRSGATGQPH
AYNVELSASYGGQARTRRMGNQANPIPLRQDTQFTQHQQVIRRTSHNVQQSHQMKMSGVN
VCGGQCCHGWSKASGSQRCTKPNCLPKCQNGGMCLRPQLCVCKPGSKGKACEQNTMPTSS
YPAQPGNGHTNGHSNGHTKGHNIVPQRPIPQQVPIPQQGYAPAPVPVSNMAQMTLTVKQS
PHLVRPQQIQPGSQQFVLKPKYYHTHTTHTQTHVQHQPDRPIPLTVGHNPIHVGNHTGRI
KVVFTPTICKVTCTGGRCQNNCELGNTTTIISENGHATDTLTAPNFRVVVCHLPCMNGGK
CSARDKCQCPPTFTGKFCQMPVQNGNGQQRQNGRQQTSQIHSTHTLPLTFSNGQNPVKYA
PSIVNIHVKHPPEASVQIHQVSQLDSNGQKVKGNGQNDRSQTQSHYTYHHSESSQKIQQQ
AHNIIYPNQQSYVPQYQPVSSNSQLGRCFQETTGTQCGKALPGLSKQEECCQSIGTSWGF
HKCQKCPKPSIPLTAGGSRHAMDCPQGYKRINNSHCQDLNECHLQGVCPNGDCLNTMGSY
RCSCKAGFIPDPTLSTCIPDTPAVHEEKGACFRLVSSGKQCLHPVSAQLSKQLCCCSVGK
AWGPRCDKCPLPGTAKFKEICPGGMGYTVTGSYKPKPPNQLPKLPSQPETINKPMITHQE
PVAPPLPLPTPEKPVEALSVTERQLPSIPVATDAPEQELVILEAASSRPVVEVEAGQPQL
SPGVSTMRMEPAYPEVVEKTSPPAPALILPSNAGQDIAPTQSAEVDECQVNPHICGQGIC
YNTVEGYTCICNGGYQMDETHTTCVDVDECLESASLCSNGRCKNTPGSFLCVCQPGFMTD
EEGTSCIDLNECLNPHACPEDGFCVNSVGSYICQYCDSGYRMSPTGQCEDINECLDMGVC
PSGMCINLLGSYECDPCPEGFQGQGGQCVDVDECLHQSTCANGKCSNFEGYFVCSCNDGF
TLSLDGQSCEDVDECQDEQVCTRGHCQNTEGSFLCNCGPGFRASPAGDQCDDVDECQELT
CDSVGQCVNNMGSYHCICPQGYQQINGTSCLDVDECLDDSELCSPHGECLNAEGSFYCVC
ERGFTASQDTHTCEDVDECSDDTRCVGGSCENSQGSYRCQCDSGYRLQADTDTCLDIDEC
AELGQSICGAWLCENTEGSYRCVVDCPPGHDRGPEGICVDIDECNVNATVCGNHGFCENT
VGSFRCLCDRGYQESQEGLGCVDVNECDLLSGVCGEALCENVEGSFLCMCPDEDQEYNQM
TAKCSPAPTASSIERKECYYNLNDENLCENVLTSSVTMEECCCTLGAGWGDNCEVHPCPV
QGTDQFSQMCPAGRGNVPTGDAVFGVTAAESYKDSDECALFGQEICKDGYCLNSPGSYEC
YCKTGLYYDDVNLKCRDIDECQDESSCMGGECLNTQGSYMCFCTHPMVLDSDNKHCVITP
EVAEQHSVQTDYQGICWQTVTGTRKTCTKPLANRKTTFTECCCLFGEAWGMDCALCPLKN
TEDYASMCNVPMSEGRGRPYGRDALVAGPVQEYEVSLDYENPYDAFEGLRAEECGILNGC
ENGRCVRVQEGYTCDCFDGYTLNMSRMACVDVNECSELNNQMSLCKNAKCINTQGSYKCV
CLPGYTPSERPNYCVAREQGAPAAHTERE
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggcttggatcagatgggacctcttattttctataggtttattcatttcactggcattt
gtctccaccgatcagagtggctttaggagatactacgtgttgcagccaggaccgagcggg
acggacagagtacatgtgagttccatttcttcgcgctccggtgccacgggacaaccccac
gcctacaatgtggagctctcggccagttacggtggccaggcccgaacccgtaggatgggt
aaccaagcgaacccgatcccgcttcgccaggacacacagtttacgcagcatcagcaagtc
attcggcgcaccagccacaacgttcaacagagtcaccaaatgaaaatgtcaggggtgaat
gtctgtggagggcagtgctgtcacggatggagtaaggcctctggatcgcagcggtgcacc
aagcccaactgtctgcccaagtgccagaatggaggaatgtgtctgaggccccagctctgt
gtctgcaagccgggctccaagggcaaggcatgtgaacagaacaccatgcccacctcctcc
tacccagcgcagccagggaacggccacaccaatggacacagcaatgggcacaccaaggga
cacaacatagtgccccagcggcccattccccagcaagtgcccatcccccagcagggttat
gcccctgccccagtccctgtcagcaacatggcccagatgaccctgaccgtcaagcagtcc
ccccacctggtccggcctcagcaaatccagcctggtagccagcagtttgtcctgaagccc
aagtactaccacacacacaccacacacacccagacgcacgtccaacaccagcctgacaga
cccattcccctgacggtgggacacaaccccattcacgtggggaaccacacgggccggatc
aaggtggtcttcacacccaccatctgcaaggtgacctgcacaggggggcggtgccagaac
aactgtgagctgggcaacaccaccaccatcatcagtgagaatggccatgccacagacacc
ctcactgcccccaacttcagagtagtggtatgccatcttccctgcatgaatggtggaaag
tgcagtgccagggacaagtgtcagtgcccgcctaccttcactgggaagttctgccagatg
cctgttcagaatgggaatgggcagcagcgccagaatgggaggcagcagacgtcccagatt
cactccactcacactctgcccctcaccttcagcaatggacagaaccctgtgaaatatgcc
cccagcatcgtgaacatccacgtgaagcaccctccagaggcctcagtgcagatccaccag
gtctcccagctggattccaatgggcagaaggtgaaaggcaatgggcagaatgaccgctcc
cagacccagtcccactacacctaccaccactcagagagcagccagaagatccagcagcag
gcacacaacatcatctaccccaaccagcagagctacgtaccccagtaccagcctgtctcc
tccaacagccagctgggacgctgcttccaagagaccactggcacacagtgtggcaaggcc
ctccctggtctcagcaagcaggaggaatgctgtcaaagcatcggaacatcctgggggttc
cacaaatgccagaagtgcccaaaaccatctattcctctgacagcaggaggatccagacac
gcgatggactgcccccagggatacaagcgcatcaacaactcccactgccaagatcttaat
gagtgccacctgcagggtgtgtgtcccaacggagactgtctgaacaccatgggcagctac
aggtgcagctgtaaggccggcttcatccctgaccccactctctccacctgtatccctgac
acccctgccgtccacgaggagaaaggggcttgtttccgattggtcagttcggggaagcag
tgtttgcacccggtgtctgctcagctgagcaaacagctgtgctgctgcagtgtgggcaag
gcctggggcccgcgctgtgacaagtgccccctgccaggaacagcaaaattcaaggagata
tgccctggtgggatgggctacactgtcacaggctcttacaagcccaaaccacccaatcaa
ctacccaaacttcccagccaacctgagaccatcaacaagccaatgatcacccaccaagag
cctgtggccccgcctctgccccttccgacacctgagaaaccagtggaggccttgagcgtc
actgagagacagcttccctctattccagttgccacagatgcacctgagcaggagctggtt
attctggaggctgctagtagtaggccagtagttgaggtcgaggctggacagccacagctc
tctcccggtgtctctaccatgaggatggagccggcctacccagaggttgtggagaaaacg
tccccccctgctccagcgctgatcctcccctccaacgctggccaggacattgccccgact
cagtcagcagaggtggatgagtgccaggtcaaccctcacatctgtggccaggggatctgc
tacaacactgtggagggttatacctgcatctgtaacggcggctaccagatggacgagaca
cacaccacctgtgtagatgttgatgaatgcctggagtctgcatcactgtgctccaacggc
cgctgcaagaacactcccggcagcttcctgtgtgtgtgccaaccaggcttcatgacagat
gaggagggaaccagttgcattgatttaaacgagtgtctgaacccccacgcttgtcctgag
gatggcttttgtgtcaacagcgtgggttcctacatctgtcagtactgtgacagcggctac
aggatgagcccaacaggccagtgtgaagatataaatgagtgtctggacatgggtgtgtgt
ccatccggcatgtgcatcaacttactgggctcgtatgagtgtgatccatgtccagagggc
ttccagggccagggaggacagtgtgtcgacgtagatgaatgcctgcaccagtcaacttgt
gccaacgggaagtgctccaactttgagggatactttgtctgctcgtgtaacgatggattc
acgctcagcttagatggacaatcatgtgaagatgtggatgagtgccaggatgagcaggtg
tgtactagggggcactgccagaacactgagggttctttcctgtgtaactgtgggcccggc
ttcagggcctccccggcaggggaccagtgtgacgatgtggatgagtgccaggagctgacc
tgtgacagtgtgggccagtgtgtcaacaacatgggctcctaccactgcatctgcccccag
ggctaccagcagatcaacggcaccagctgcctagatgtcgacgagtgtctggatgactcg
gagctgtgttccccacacggggagtgtctcaatgctgagggctccttctactgtgtctgt
gagagaggcttcactgccagccaggacacacacacctgtgaagatgtggatgagtgctcg
gatgacaccaggtgtgttggcggctcctgtgagaatagccagggttcctacagatgccag
tgtgacagtggctaccgcctgcaggcagacactgacacatgcctggatatcgatgagtgt
gcagagttgggccagagtatctgtggggcgtggctctgtgagaacacagagggctcctat
aggtgtgtggtggactgcccccccggacacgaccgtggcccagaaggcatctgtgttgat
attgatgagtgcaacgtcaatgccactgtgtgtggcaaccacggcttctgtgagaacacg
gtcggatccttccgctgcctgtgtgaccggggctaccaggagtcccaggagggcctcggc
tgtgtggatgtgaatgagtgtgatttgcttagcggtgtgtgtggcgaggccctgtgtgag
aatgtggagggctccttcctgtgtatgtgccccgacgaggaccaggagtacaaccagatg
accgccaagtgcagtcccgctcccacagcctcgtcaatagagaggaaggagtgctactac
aacctcaatgatgaaaacctgtgtgagaacgtgctgaccagcagtgtcaccatggaagag
tgctgctgtacactgggggcaggctggggggacaactgtgaggtgcacccctgccccgtc
cagggcactgatcagttttcccagatgtgtccagctgggagaggcaatgtccccactggt
gacgctgtgtttggagtgaccgcagccgagagttataaagattcagatgagtgtgcgttg
tttggccaggagatctgtaaggatggctactgcctcaacagcccaggaagctacgagtgt
tactgtaagactggcctgtactacgacgatgtcaatctgaagtgcagagacattgatgag
tgtcaggatgagtctagctgtatggggggagagtgtttgaacacacagggctcctacatg
tgtttctgtacacaccccatggtgttggactctgacaacaagcactgtgtaatcacccct
gaagtggcagagcaacactctgtgcagactgactaccagggtatttgctggcagacggta
acgggcacccggaagacttgcacaaagcccctggccaacagaaaaacaaccttcacagag
tgctgctgtctgtttggcgaggcctggggcatggactgtgccctttgccccctgaagaac
acagaggactatgcctccatgtgtaacgtgccaatgagtgaaggacgggggcgtccgtat
ggtcgcgatgcccttgtggctgggcccgtccaggagtatgaggtcagcctggactatgag
aacccatatgatgcatttgagggcctgagagcagaagagtgtggcattctgaacggctgt
gaaaacgggcgctgtgtgcgggtacaggagggctacacctgcgactgcttcgacggctac
accctgaatatgtcccgcatggcgtgtgtggatgtaaatgaatgttccgagctcaacaac
cagatgtccctctgcaagaatgccaaatgtatcaatacgcaaggatcctacaagtgtgtg
tgcctgcctggatacaccccctctgagcggcctaactactgcgtggccagggaacaaggg
gcaccagcagcgcacacagagagggagtga
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