Coregonus clupeaformis (lake whitefish): 121572036
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Entry
121572036 CDS
T08357
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4 isoform X1
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121572036
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121572036
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
DUF7557
Motif
Other DBs
NCBI-GeneID:
121572036
NCBI-ProteinID:
XP_041739836
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Position
1:69461022..69564826
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AA seq
1250 aa
AA seq
DB search
MSDAEGEGGGEMSKTEKDESWIPKIIKKRVCTTFVEDSFSNGRLCQCGGTRDTHESVALG
DYFSTAIVSHWDSSQHSSEYPTDAFGELEFAGASKRHSKFLRLSWDTPPAIVYTLLTTHW
GLPPPNLVVSVVGGEGRAKVKTWVREVLRQGLVKASQSTGAWILTGGLREGVGRCVGEAV
RDHATAAASVSLTKVVALGIAPWGLVHNRQQLVNPQGSFPARYYFQNTSRDSCCLDNNYQ
AFLLVDDGSVGRRGGEASFRARLEDYISHQRTGIWGSGSIDIPVLCMLISGETTMLERLD
LSLRNSMPWLVLAGSGGVADLVSDILESLSSTPPLLSSTEGEGEAGPSVDLKDRVAERVR
KHFPSETEMDKLVERVLSIYQNRDLITVYHGEQEGPDDFDTVLLKALVRASKQRVSSEAS
PYTEELKLAVTWNRVDIAKSELFNGDIHWRYQDLQDSMTDALVNDKPQFVRLFTENGLNI
LDYLTYGRLESLYRSVADSSLAYALLQRRLGERQGMTGSQAILLDVSPAKGSGGSPGGLR
PANKFSLFEVSRVLEDLMGDVCQPFYHAPLELENITSQRKALKRVSKLLRGNCVYRDKRC
LFPWASLFVWAVLQNRNDMAVFFWEMAGESVLSALSGCKILRELSKLESQTETKLAMKEL
AQRFENLAHDVFSKCYQSSESRSFTLLIRKSPVWGGTTCLKMGMAADARLFFSHDGVQSL
LSQIWWGDMKRSTEVWKLLLTFFCPVLMYTQLISFRELEEPGKPDEVAQGRDNDSLYGET
IFSFSDIKHIEHHTQGPNSPRYPLKGRPNTPPKRPFVVSRWRQFWFAPVTSFLGNVLMYF
LFLLLFAYVLLVDFKPPPPRGPAIAECVLYFWVFTIVCEEIRETFLMGSMTWHQRMRKYV
QDVWNKCVLTAVILFIIGLTCRMFQWSYEFGRAVLCVDYMVFTLRLIHIFAIHKQLGPKI
IIVGKMMKDIFFFLFFLGVWLMAYGVANQALLYSYDPRPAWIFRRLFYRPYLHIFGQIPV
EEIDVGKEWDMECTDNVTLIEGGAEPCRSQYANWLVIILLVIYLLVTNILLINLLIAMFS
YTFSKVQVQSDTYWKFQRYNLIVEYHSRPSLAPPFIFLSHFHLFIKRYIRKVPSVKILHF
VLELKGKAANRLMTWEAIQKENFLTAQSKIQRGSDSERLKRMSVKVDSVLKQMAETRDHD
RRLRALESELEYCSSALSWIVEALSQSNMVKPTRPPPTLREPFPSSSASI
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgcggaaggagaaggcggcggcgaaatgtcaaagacggagaaagatgagagc
tggatacccaaaattatcaagaaacgagtgtgcacaactttcgtagaggattctttcagt
aatggcaggctgtgtcagtgtgggggtacgcgggacacacatgagtcagtggctctgggg
gattatttcagcacagccatcgtcagccactgggacagctcccagcattcctccgagtac
cccaccgacgctttcggagagctggagtttgccggcgccagcaagagacacagcaaattc
ctgcgtctctcgtgggacacccctcctgccatcgtctacaccctgttgacgacccactgg
gggctacctccgcccaacctggtggtgtcagtggtgggcggggaggggagggcaaaggtc
aagacgtgggtacgggaggtcctgaggcagggattggtcaaagcctcccagagcacagga
gcgtggatactgacgggaggcttgcgtgagggtgtggggaggtgtgtaggggaggcggta
agggaccatgccaccgctgccgcctctgtctccctgaccaaggtggtggctctgggcatc
gctccctggggcctggtccacaaccgccagcagctggtcaatccacagggtagcttccct
gctaggtactacttccagaacacgtcccgtgactcatgctgcctggacaacaactaccag
gccttccttctggtggatgatgggagtgtaggccgcagagggggcgaggcaagcttcagg
gcccggctggaggattacatttcccatcagcgcacaggcatctggggcagtggaagcatt
gacatccccgtcctgtgcatgctgatatctggagagacaaccatgctggagcggttggat
ctctctctgaggaactccatgccctggctggtgctggctgggtcagggggtgtggccgac
ctcgtgagtgacatcctggagagcctatcgtctacgccccctttgctgtcctccactgag
ggggagggggaggcgggacctagtgtggaccttaaagacagagtggccgagagggttaga
aagcactttccgtccgaaacagagatggacaaactggtagaacgggttctgagcatctac
cagaatagggatctgatcactgtctaccatggagagcaggagggaccagacgactttgac
acggtcctgctcaaagccttggttagagcgagtaagcagcgtgtgtcgagtgaagccagc
ccctacactgaagagctgaagctggctgttacctggaacagagtggacatcgccaagagt
gagctcttcaatggagacatccactggaggtaccaggacctgcaggactccatgacggac
gcgctggtcaatgacaagccacaatttgtgcgcctcttcaccgagaacggactaaacatc
ctggactacctgacctacgggcggctggagagcctctaccgctcggtggccgacagctct
ctagcctacgccctgctgcagcgccgcctaggggagcgccagggtatgacaggttcgcag
gccattctgctggatgtctctcccgccaaagggtccggtgggtcgccggggggcctgcgg
cctgcaaataagttcagtttgtttgaggtgtcaagagtcctggaggacttgatgggggat
gtgtgtcagccattttaccacgcaccactggaactggagaacatcacctcccagagaaag
gctctcaagcgtgtgagtaagttgttgcggggcaactgtgtgtaccgggacaagcgctgt
ctctttccctgggctagtctcttcgtctgggctgtgctgcagaaccgcaacgacatggcc
gtcttcttctgggagatggcaggcgagtcggtcctcagtgctctgagcggctgtaagatc
ctacgggagctgtccaagctggagagccagacggagaccaagctggccatgaaggagcta
gcgcaaaggttcgagaacctggctcacgatgtattcagtaagtgttaccagagcagtgag
agtcgctccttcaccctgctgatcaggaagtctcccgtgtggggagggaccacctgtcta
aagatgggcatggccgccgacgcccgcctcttcttcagccatgatggagtgcagtctctc
ctgtctcagatctggtggggggatatgaagaggagcacggaggtgtggaaactcctcctc
accttcttctgtcccgttctgatgtacacccagctcatctccttcagggaactggaggag
ccggggaagcctgatgaggttgcgcagggtagagacaatgacagcctttatggagagaca
attttctccttctctgacatcaagcacattgaacatcatacacagggtcctaatagtccc
agatatcctctaaaaggcaggcccaacaccccacctaaaaggccttttgtggtatcccga
tggcggcagttttggttcgcacccgtcacttcctttttaggcaacgttctgatgtacttc
ctgttcctcctgctgtttgcctacgtgctattggtggactttaagccgccgcccccgcga
ggccccgctatcgccgagtgtgtgttgtacttctgggtgttcacaatcgtctgtgaggag
atccgagagacgttcttaatgggcagcatgacgtggcatcagagaatgaggaagtatgtc
caggacgtttggaacaagtgtgtcctcaccgccgtcatactcttcatcataggcctcacc
tgcaggatgttccagtggtcctatgagtttggccgagcagtcctgtgtgtggactacatg
gtcttcacccttcgtctcatccacatcttcgccattcacaaacaactggggccaaagatc
atcatcgtcggcaagatgatgaaggatatcttcttcttcctcttcttcctgggggtgtgg
cttatggcatacggggtggccaatcaagcgctgctgtactcctatgacccccgccccgcc
tggatcttccggcgcctgttctacaggccatacctgcacatatttggacagatcccagtg
gaggaaatagatgtggggaaggagtgggacatggaatgcactgacaatgtgacgctgatc
gagggaggcgcggagccctgcaggagccagtatgctaactggctagtgatcatattactg
gtcatctacctactggtcaccaacatcctgctcatcaacctactcatcgccatgttcagt
tacacattctctaaggtgcaggtccagagtgacacctactggaagttccagcgctacaac
ctgattgtggagtaccactcccggccctcccttgctccccctttcattttcctctcccac
tttcacctcttcatcaagagatacatccgcaaggtaccctcggtcaagatcctccatttt
gtattggagctgaaggggaaagcagctaacaggctaatgacatgggaggccattcagaag
gagaacttcctgacagcccagagcaagatccagagagggagtgactctgagaggctcaaa
cggatgtcagtcaaggtggacagtgtgctgaaacagatggctgagacaagggatcatgat
cgcagactgagggctctggaatcggagttggagtattgctccagtgcactcagctggata
gtggaagccctctcacagagcaacatggtcaaacccactcgccccccgccaacacttaga
gaaccattcccttcctcatccgcttccatctga
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