Coregonus clupeaformis (lake whitefish): 121572988
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Entry
121572988 CDS
T08357
Name
(RefSeq) nectin-4
KO
K06593
poliovirus receptor-related 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cclu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121572988
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121572988
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121572988
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Nectin family
121572988
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
V-set
I-set
ig
Ig_2
C2-set_2
TMEM154
Protocadherin
LapA_dom
EphA2_TM
DUF7237
DUF6377
FAM176
LST1
Motif
Other DBs
NCBI-GeneID:
121572988
NCBI-ProteinID:
XP_041740964
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Position
8:15566246..15584393
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AA seq
610 aa
AA seq
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MTLLLWILGSFIAVVQGDFVEPSPLFSMRSLTEVETRLPCRFKVEVGQVVVQVTWTKEKA
DGTKDQMITVHHTAGHTEFGQYSGRVRFGSSEPTVDSSLIIMNTVESDEGRYNCHISTFP
SGNFERQLSLTVWTTPISSLDPVVLVEGQSYRLAASCRSVARPLPSLSWDTDLTGSSQNR
SSVGRSVSIHYSLHPLRSMNGKRLDCLVWHPTLEGPRRITNNLVVHYPPNAEISGFDQNW
YAGLEGAVLSCVSGGNPKPQSFTWTRKGGDLPEGVTARNGSLLFNRPLSLTDAGIYQCVA
NNIVGVGKAEVEITVTELPQNPALFNSLLMIIVGGVAGGLLLIMVIVVISVTRHHKRKNK
KLEKELTVKKEEISTLSRQASFRRVNSVSTDARGQFFQMEENIPLRVEGTLRASLSSLGE
QGHIRDSRSTLVGGGGLDYLGRPVLNNSSRRGRESRATDREENRLRVESYVRNSTMSLET
RLHPPIQPSPFPMEQSTKLLRSLNGSAIIPTEGGLHVRHSPLSCSYPPVTDEEEEGESVE
GERGTSPRMSLIDQGRSEDQDNSSQISDAERGLNHHFQQNNGTLRPKPRPNGIPLTPSPH
ASLIHKAQIV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgacactgctgctgtggatccttgggagtttcattgctgtggtgcagggggactttgtg
gagccctctcccctgttctcgatgcgctccttgaccgaggttgagacccggctgccctgc
cggttcaaggtggaagtgggccaggtggtggttcaggtcacctggaccaaggagaaagca
gatggtaccaaggaccagatgatcacagttcaccacactgccggacacacagagtttggt
cagtactcggggcgtgtgcggttcggcagcagtgagcccacggtggactcgtctctgatc
atcatgaacactgtggagtcagacgagggcaggtacaactgtcacatcagcaccttcccc
tctgggaactttgaacgacagctgtcactcaccgtgtggaccacacccatctcctccctg
gaccccgtggtccttgtcgagggccagtcctaccgattggccgcctcctgccgctccgtg
gcccgccccctccccagcctctcctgggacacggacctgacgggcagttcacagaacagg
agctcggtgggtaggtcagtctccattcactactcgctgcaccccctgaggagtatgaac
gggaagaggctggactgtctggtgtggcacccgactctggagggaccccgcaggatcacc
aacaacctggtggtgcactatcctcccaatgcagagatctcagggtttgatcagaactgg
tatgctggtctggagggagctgtcctcagctgtgtcagtggaggaaaccccaaaccacag
agtttcacctggacaaggaagggtggagacttaccagagggcgtaacggcaagaaatgga
tccctgctgtttaataggcccctcagcctgacagacgctggcatctaccaatgtgtggcc
aataacattgtgggggtggggaaagcagaggtggagatcactgtgacagagttgcctcag
aatccggcgttgttcaatagtctcctgatgatcatagtgggaggggtggccggaggactg
ctactcatcatggtcatcgtagtaatctcagtgacccgtcaccacaaacgcaaaaacaag
aaactggagaaagaactgactgtaaagaaggaggagatcagtactctctccagacaggcc
tctttcaggagagtcaactcagtcagtacggatgctagaggacagttctttcagatggag
gagaatatccctctcagagtggaggggacactgcgggccagtctgtcctctctaggggag
caagggcacatcagggacagtcgctctactctggtagggggaggtgggctagactacctg
ggtcgacctgttctgaacaactcttcacgaagagggagggagagcagagccacagacaga
gaggagaacagacttagggtggagtcatacgtccggaatagcactatgtctttggaaacc
cgtctccacccgcctatccaaccctctcccttcccaatggaacaatccaccaagctgctg
aggtccctgaacggcagcgccatcattccaacagaggggggtttacatgtacggcactcc
cctctcagctgcagctaccctcccgtcacagacgaagaggaggagggtgaaagtgtggag
ggagagcgggggacaagccccaggatgagtctgatagatcaggggaggtcagaggaccag
gacaacagttctcagatctcagatgcggaacgtggactcaaccatcacttccagcagaac
aatggaacgttgagacccaaaccccggcccaacggcatccccctcacgccatccccacac
gcctccctcatccacaaggcccagattgtatag
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