Coregonus clupeaformis (lake whitefish): 121573295
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Entry
121573295 CDS
T08357
Name
(RefSeq) oxysterols receptor LXR-alpha-like isoform X1
KO
K08536
liver X receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121573295
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121573295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121573295
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121573295
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121573295
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
121573295
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
121573295
NCBI-ProteinID:
XP_041741085
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Position
15:66037495..66062056
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AA seq
469 aa
AA seq
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MSTLSATDITDVGHGEVFDGAPELQLDCLGSGNDRSSAEMKHEGNLLPLEPPHHAGFSSP
PQKGPSSLAEKSSPLPMEPSDIKADSAGDMPANTEGKPVKRKKGPAPKMLGNEVCSVCGD
KASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKCREAGM
LEQCVLSEEQIRGKKMKKNEEENARTSAVVTPTLVPEVVPLAPEQLEMIEKLVSMQKQCN
KRSFIDRPKVTVIPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTR
EDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFS
KGMNDLHLDEAEYALLIAINIFSAGQRSSDRPNVQDHELVERLQQPYVDALRSYIMIKRP
NDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactgtctgcgactgatatcacagatgttggtcatggtgaggtgttcgacggg
gccccagagctgcagctggactgcctcggcagtggtaacgaccgcagcagtgcagaaatg
aagcatgagggcaacctcctccccctggaaccgccccaccatgcagggttttccagcccc
ccccagaaagggccttcctcactagctgagaagagcagcccgctgcccatggagcccagc
gacatcaaggccgactccgccggcgacatgcctgccaacacagagggcaagccggtgaag
aggaagaagggtccagcccccaagatgctggggaacgaggtgtgcagcgtgtgcggggac
aaggcttcgggcttccactacaacgtgctgagctgcgagggctgcaagggcttcttccgc
cgcagtgtcataaagagcgcccagtactcgtgcaagaacaacggccgctgtgagatggat
atgtacatgcgccgcaagtgccagcagtgccggctgcgcaaatgccgtgaggcgggcatg
ctggagcaatgtgttctctcagaggagcagatccgagggaagaagatgaagaagaacgag
gaagagaatgcgcgcacgtctgccgtggtgacccccaccctggtgccggaggtggtcccg
ctggcgcccgagcagctggagatgatcgagaagctggtgtccatgcagaagcagtgcaac
aagcgctcgttcatcgaccggcccaaagtcacggtgattccgtggccccagagtcaggac
cctcagaacagggaggtgagacagcagcgctttgcccacttcaccgagctggccatcatg
tcggtccaggagatagtagactttgccaagcagctgcctggcttcctggagctcaccaga
gaggaccagattgccctgctgaagacctcaactattgagatcatgctgctggagacatcg
cggcgatataaccctgccattgagagcatcacgttcctgaaggacttcagttataacaag
gaggattttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttctcc
aagggcatgaacgacctgcacctggacgaggcggagtacgctctgctcatcgccatcaac
atcttctctgcaggtcagaggtcaagtgaccggcccaatgtgcaagaccatgaactggtg
gagcgactgcagcagccgtacgtggacgcactacgttcttacatcatgataaagagacca
aacgatcacctgatgtttccacgcatgctcatgaagctggtcagcctccgcaccctcagc
agtgtccactctgagcaggtcttcgccctgcgcctccaggacaagaagctcccgccgctg
ctctctgaaatctgggatgtccacgagtga
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