Coregonus clupeaformis (lake whitefish): 121573779
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Entry
121573779 CDS
T08357
Name
(RefSeq) protocadherin gamma-C5 isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121573779
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121573779
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121573779
NCBI-ProteinID:
XP_041741974
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Position
9:28422978..28478650
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AA seq
989 aa
AA seq
DB search
MYSKPRCLPSLHFVKKMGIPIGIVFFPLRTLWMFFLLWNTIEAQTRYTIPEELNVGSVVG
NIAIDLGLGISEISERKLRIASEGVKQYFSVDLGKGELLVNERIDRESLCGQSVSCMLPL
EAIVQNPLQLHRVEIELQDINDNSPVFQNNQNVLNIAESTLTGVQFRLESAQDPDVGSNS
ICSYTLSKNDNFILNVKTSKDGTKVPELALEKMLDREHIPAHNLILTAIDGGTPSRSGTT
KITVRVLDQNDNAPVFEESLYGLKLLENTLIGTVVLTVKAVDLDEGGNGEIWYSFEPHTP
ESLQNLFSIDSQTGELAIKGELDFETGRFFKFDVLATDKGQLTMQGLCTVEVDVVDVNDN
VPDVILKSDPTPVREDAPIGTVVALLSAKDIDFGHNGKVTLSLPPGVPFKLKQSVSNNYA
LVTDSILDRESFPDYTIEITAADAGSPPLSSKKMITVSVLDVNDNSPMFSQPSYAVYVRE
NNAAGSIMCSVYATDPDIRENAKISYSILDSKVQDVSVSSYIYINSGNGSIYSMYSFDYE
KMKVFQIQVQAKDHGSPSLSSNATVHVFILDQNDNAPAVIYPSAVMGSVSHQKIPWSAKA
GHLATKISAVDADSGHNAWISYRLTEATDLSLFSVILYTGEVRTKRAVSEQDDSSQRLLI
EIKDNGEPVQSTTVTVNIMLEDRLHEPISDYRQKTAETSKRNSKITFYLIISLASVSVLS
LLTFLILVVKCVRNSMSSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLS
QSQSFRSCLSPVSEFSDFTLVKPSSTTDFKEMINVLDASLPDSAWTFESQQQNPPNNDWR
FNQQGQRPGPSGTYRYSTSTQQRWTPYGKARAGPHPEGAGGAVAGTGPWPNPPTEAEQIQ
ALMAAANEVSEATATLGPRYNAQFAMQHVPDYRQNVYIPGSTATLTANPQQMMPQQALQG
PPQAMPQVNVPNAAQTPASKKKSTKKDKK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcaaaccacgttgtctacccagtctacattttgtgaaaaaaatggggattcct
atcggaattgtgttttttcctttgcggacgctttggatgttctttctcttgtggaataca
atagaggcgcagacacgatataccattcctgaggaactaaatgtgggatccgttgttggg
aacatagcgatagatctgggtttgggaatctctgagatatctgaacgtaaattgaggata
gcctcggagggtgtcaagcagtatttcagcgtggatttgggaaaaggcgagctccttgtc
aatgagagaatagacagagagagtctgtgcggacaaagcgtcagctgtatgttgccttta
gaggctatagtacaaaacccactacagctccatcgtgttgaaattgagttacaggatata
aatgacaattctccagtttttcaaaacaatcaaaatgttctaaatattgcagagtctaca
ttgacaggtgtacaatttcgtttagaatcggctcaagaccccgacgtgggttcaaattca
atatgttcctacacgctaagtaaaaacgacaattttattttaaatgtcaaaacgagcaag
gatggaaccaaagtccccgagttggctttggaaaaaatgttggatagagaacacatacca
gcacacaatctaattctgacagccatagatggtggaactccatcccggtcaggcacaaca
aaaatcactgttcgggtgttggaccaaaacgacaatgcacctgtttttgaagaatcttta
tatggcttgaaattgctggaaaacacacttatcggtactgtagttttgactgtcaaagct
gtagatcttgacgaaggtggcaatggcgaaatatggtattcatttgaaccacatactcct
gaatcacttcagaatctattttctatcgactcacaaacgggagagctcgccattaagggt
gaattagattttgaaacaggacgcttttttaaatttgatgttcttgctacagacaaaggc
cagctaactatgcagggattgtgcactgttgaggtagatgtcgtggatgtgaacgacaat
gttcctgatgttattttgaaatctgatcctacccccgttagggaggacgcacctattgga
actgttgtggctctgctaagcgccaaggacatagactttggacataatgggaaagtcact
ctaagtttaccaccaggcgtaccttttaaattaaaacaatcagtgtccaataattatgct
ttggttaccgactccattttggatcgagaatcatttccggattacaccattgagataacg
gcagctgatgctggatcacctcctctctcatccaaaaagatgattactgtcagtgttctt
gacgtcaatgacaattcgccaatgttttcccaaccatcttacgctgtttatgtcagagag
aacaatgctgctggatcaataatgtgttcagtgtacgctacagatccagatataagagaa
aatgcaaagatctcctattctatattagactctaaagtacaagatgtgtctgtctcctcc
tatatttacataaactcaggtaacggcagcatctacagcatgtattcgtttgactatgag
aaaatgaaggtgtttcagattcaggtgcaggcaaaggaccacggctctccgtctctgagc
agcaacgccacggttcatgtttttattctggaccagaacgacaatgcccccgctgttatt
tacccctccgctgtcatgggttctgtttcccatcagaagattccctggtccgctaaagca
ggccacctcgccactaagatatcggcagtggacgcagactctggccataacgcctggatt
tcctataggctgacggaggccaccgacttgtctctgttcagtgtgattctttacacggga
gaggtgaggactaaacgcgctgtttcagagcaggatgactcctctcagaggctgcttata
gagataaaggacaatggggagccggtccagtccaccacagtcacagtcaacataatgtta
gaggacaggctccacgagcccatctcggactaccgccagaaaacagcagagaccagcaag
agaaacagtaaaatcaccttttatttgatcatctctctggcctcagtgtccgtcttgtct
ttgttgacttttctcatcttagtggtgaagtgcgttagaaacagtatgagcagctcgagt
tgttgtatcagaagggctgactctgacggatacaagaatcccaacagaaacctgcagctc
cagctcaacactgacggccctattaagtatgtggaggtcctgggaggggacatgttgtct
cagagtcagtccttcaggtcgtgtctctctccagtgtcagagtttagtgatttcactctc
gttaagcccagcagcaccactgactttaaggaaatgataaacgtgcttgacgcatcttta
ccagacagtgcgtggactttcgagagccaacagcaaaatccacccaacaatgactggcgc
tttaaccagcagggacagagacctggacccagtggcacgtacaggtacagcaccagcact
cagcagagatggacaccgtacgggaaggcgagagctggcccccatcctgagggggcaggt
ggtgcagtagctggaacaggaccctggcccaacccccccaccgaggctgaacagatccag
gctctgatggctgctgccaacgaggtgagcgaagcgactgcgacccttggcccccgctac
aatgcccagttcgccatgcagcatgtgcccgactaccgccagaacgtctacatccccggc
agcacggccaccctgacagccaacccccagcagatgatgccccagcaggccctgcagggc
ccgcctcaggctatgccccaggtcaacgtccccaacgctgcccagacccccgccagcaag
aagaagtccaccaagaaggacaagaagtaa
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