KEGG   Coregonus clupeaformis (lake whitefish): 121573792
Entry
121573792         CDS       T08357                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121573792
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121573792
   04121 Ubiquitin system [BR:cclu04121]
    121573792
   03036 Chromosome and associated proteins [BR:cclu03036]
    121573792
Enzymes [BR:cclu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     121573792
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    121573792
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     121573792
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    121573792
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     121573792
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 121573792
NCBI-ProteinID: XP_041742022
LinkDB
Position
9:complement(29241824..29288621)
AA seq 1388 aa
MEAGADSGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSNSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGLRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLVKRPTVVDLVDWVDNMWPLKLKQRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDVFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYNEMCWYVLERYVHCLTKRSHLAPEFHREPLLI
DLETKLSTESPSSDSRSQDMDEEDSCETQQGRDELGDRSAFDDPCSPDNRKGKPSGPQPL
KAALEDSCIHTSTQPPEFPKTPSGSPGSESQSKWTHLTEFELKGLKALVEKLEALPENKK
CVPDGIEDPQALLDDMKVVLKEHEDDDPKMAATGVPVVCWPKKSAKQQRPPNRPKPKMAA
SSPVAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM
RQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNLMLMECSICNEIVHPLCLKVKNSGGV
VNEELPNCWECPKCNHAGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDIKEESDPPS
VPTSPTAVKRKAERDDTPKRKAEEYPPLKKRSPMLSLGGLPHPRPRPEDNPLRKKRKLFD
IKDEDEPPVVKKKKKPPKPDDTFTPKLLRPIKQERVDEDEDHEEEDRYTGDRVAAKGKRE
EEDEDKEEEEEEKDGGVEDRKDGKVKTMLSPLLRTSAARESDQSCSSSPRAGPSSEGGDA
PEKTLGQLKAHQRRRLPNKELSKELSKELNQEIQKTEDCLANQNRRPLKKENSPTNNNRR
PLKTEDSSTNQNRRPLKTEDSPTNHNRRPIKTEDGLSNHNRRPLKTEDCLANQNHRPMKT
EPESDGEEPKPKRPLDNGSSDLGDWLHPRGREVNGTPRQLSPLGWNRSPPITPICPRPPP
CRSPPKCVQMERHVIRPPPISPPPDRLPLDDGQAHVMRRELWMVVFSHLAHRDLCVCMRV
CKTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRL
PGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDN
RSKLRNVMDLRLAGLDITDTSLRLLIRYMPQLTRLDLSYCNHVTDQSVNILTAAGTSTRD
SLTDVNLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGLVE
EKLLQKLS
NT seq 4167 nt   +upstreamnt  +downstreamnt
atggaagcgggtgcagattctggacgcaagctgcgctccatctgccggacaatgtacgac
gaaaatgaggacttctctgacgttgaagaaattgcaaatgtcaggggttttaatctggag
gagaaacttgttagcaattcgtacaacacacatttcgttcagttgatggacggcaaagat
ttcacttatgagtatgttcagagagaggcacttcagacccctcttattttcaaagccaaa
gatggactggggctcagaatgccagacccggagttcaccgtcagtgagattaaaggtttg
gttggtagccgtcgtgccgttgacgtgatggacgtgagcactcagaaaggctctgagatg
agcatggctcagtttgtccgctactacgagacgcctgaggaggagcgggacaaactcttc
aatgttatcagcctggagttcagccacaccaaactggagaacctcgtcaagaggcccact
gtggtggatctagtggactgggtggacaacatgtggccccttaaactgaaacaaagacaa
actgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggaggaaaggtgttctggctggtgcctccgacacctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacgtcttcctgggagaccgt
gcagatggctgccagagagttgagctaaaacagggctacaccttcttcatcccctccggc
tggattcatgcagtctacacccccgaggacacactggtgttcggaggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaacaggactaaggttcat
tccaagttccgctacccgttctacaatgaaatgtgctggtatgtcctggagagatacgtg
cactgtctgaccaagcgctcccatctcgctccggagttccacagagagcctctgctaatc
gacttggagacgaagctgagcactgagagcccctcctctgactcgcggagccaggacatg
gacgaagaggactcctgcgagacgcagcagggacgagatgaactgggggacaggtcagca
tttgatgacccgtgctctcctgataacaggaagggtaaacccagtggccctcagcccctc
aaagctgccttggaggatagctgcatccacacctccacccagcctccagagttccccaaa
accccctctggctcaccaggctcagagtctcagagtaaatggactcatctgactgagttt
gaactgaagggccttaaggccctggtggagaagctggaagcactccccgaaaataagaaa
tgtgtcccagatggcatcgaggacccccaggccctgctggatgacatgaaggttgtcttg
aaggaacatgaagacgatgatcccaaaatggctgccactggagtacctgtggtgtgctgg
cccaagaagtctgccaagcagcagagacctcccaacaggcccaaacccaaaatggcggcc
tcgtctcctgtggcggcggtcaagctgtcggccagccggagcacgtctggcgcccggcgg
aggaggacgcgctgtcggaagtgtgaggcgtgcctgaggacagagtgtggagaatgccac
ttctgtaaagacatgaagaagtttggagggccgggtcgtatgaaacaatcctgcatcatg
aggcagtgtatcgcgcctgtcctgccccacaccgcagtgtgtctggtgtgtggggaggca
gggaaggaggacacggtggaggaagaggaggacaagtttaacctcatgctcatggagtgc
tccatctgcaatgagatagtccatccactctgcctcaaggttaaaaattctggtggagtt
gtaaatgaagagttgccaaactgctgggagtgtccaaaatgcaaccatgcagggaagacc
gggaaagctgtcaagcaaaaaagaggaccagggttcaagtacgcgtccaaccttcccggg
tcgctactgaaggactcgcgattgaaccgtgacatcaaggaagagtccgacccgcccagt
gtgccaacgtcacccactgcagtgaagaggaaggcagagcgtgatgacacccccaagagg
aaagcagaggaatatcctcctctgaagaaacgttctcccatgttgtctctgggcgggcta
ccccatcctcgacccaggcctgaggacaaccctctgaggaagaagaggaagctgttcgac
attaaagatgaggacgagcctcctgttgtcaagaaaaagaagaagcccccaaaacctgat
gacaccttcactcccaagctgttacggcccatcaagcaagagagagttgatgaggacgaa
gaccatgaagaggaggacagatacacaggggacagggttgcagctaaagggaaaagagaa
gaagaggatgaagataaggaggaggaagaagaggagaaagatggtggtgtagaggacagg
aaagacggtaaagtaaagactatgctgagtccactgctacggacgtctgcagccagagag
agtgaccagtcctgctccagctctccccgggcagggcccagcagtgaggggggtgatgcc
ccagagaagacacttggccagctgaaggcacaccagcgacgccgcctccccaacaaagag
ctgagcaaggagctgagcaaagagctcaaccaggagatccagaagacagaggactgcttg
gccaatcagaaccgcagaccactgaagaaggagaacagcccaaccaataacaaccgtcga
ccactgaagactgaggactcctcgaccaatcagaaccgcagaccactaaaaacagaggac
tcccccaccaatcataaccgcaggccaattaagactgaggatggcctatccaatcacaac
cgtcgaccattgaagaccgaggactgcttggccaatcagaaccacaggccaatgaagacc
gagcctgagagtgatggggaggagcctaagcccaagcggccactcgacaacggcagcagt
gacctcggagactggctccaccccagggggcgggaggtgaacgggacaccccgccagctc
tcgcccctggggtggaaccgcagccctccgatcacgcccatttgcccacgcccccctccc
tgccgctcaccgcccaagtgtgtacagatggagcgtcacgtgatccggccgcctcccatc
agccccccgccagacagacttcccctggatgacggacaggcccacgtgatgcgcagggag
ttgtggatggtcgtgttcagccacctcgcacacagagacctgtgtgtctgcatgcgcgtc
tgcaagacctggaacagatggtgctgtgataagagactgtggacgcggatcgatctgaac
cgctgtaaatccatcactcccctaatgctgagtggcatcatccgcagacagcctgtggct
ctggacctcagctggaccaacatctccaagaagcaactcagctggctcatcaacaggctg
ccaggtctgcggatgctgctgctctcaggttgctcctgggtggctgtgtctgccctctgc
actgccagctgcccgctgctgcgcaccctggatgtccagtgggtagaggggctcaaagac
gcccagatgagggatctgctctcaccccccacagacaacagaccaggtcagctggacaac
aggagtaaactgcgaaacgtgatggacctgcgtctggccgggctggacatcacggacacc
tccctgcgcctcctcatccgatacatgccccagctgaccagactggacctgagctactgc
aaccacgtcactgaccagtcagtcaacatcctgaccgctgcagggacctccaccagagac
tcgctcactgacgtcaacctctccgtgtgcaacagagtcacggaccagtcgctgacctac
ttcaagcgctgtggaagcatctgtcatattgacttgcgctactgcaagcaggtgaccaaa
gagggctgcgagcagttcattgctgagatgtcagtgagtgtacagtttggactagtagag
gagaaactactgcagaaactcagctag

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