KEGG   Coregonus clupeaformis (lake whitefish): 121575336
Entry
121575336         CDS       T08357                                 
Name
(RefSeq) DLA class II histocompatibility antigen, DR-1 beta chain
  KO
K06752  MHC class II antigen
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121575336
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121575336
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121575336
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121575336
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121575336
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121575336
  Exosomal proteins of epithelial cells
   121575336
  Exosomal proteins of breast milk
   121575336
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 Ig_3 C2-set_3 Cna_B
Other DBs
NCBI-GeneID: 121575336
NCBI-ProteinID: XP_045078817
LinkDB
Position
10:21179054..21182677
AA seq 247 aa
MSMLIAFYICLTLFLSIFAGTDGYFEQVVRQCRFTSKDLHGIEFIDSYVFNQAEYIRFNS
TVGKFVGYTEHGVKNAEAFNSDASLLAQEQGELERYCKTNAAIDYSAILDKTAEPHVRLS
SVTPPSGRHPAMLMCSAYDFYPKPIRVTWLRDGQEVKSDVTSTEELANGDWYYQIHSNLE
YTPKSGEKISCMVEHISLTEPMMYHWDPSLPESERNKIAIGASGLVLGAILALAGLIYYK
KKSSGVL
NT seq 744 nt   +upstreamnt  +downstreamnt
atgtcgatgctaattgccttctacatttgcctgaccctgtttttgtccatattcgctgga
acagatggatattttgaacaggtggtgagacagtgccgattcacctcaaaggatctgcat
ggtatagagtttatagactcttatgttttcaaccaggctgaatatatcagattcaacagc
actgtaggaaagtttgttggatacactgagcatggtgtgaagaatgcagaagcattcaac
agtgacgcttcgttactggctcaagagcaaggggagctggagcgttactgtaagactaac
gctgctatcgactacagtgccatactggataagacagctgagccccatgtcagactgagc
tcagtgacgccccccagtggcagacaccctgccatgctgatgtgcagcgcctatgacttc
taccccaaaccaatcagagtgacctggctgagggacggacaagaggtgaaatctgatgtg
acctccactgaggagctggctaacggggactggtactaccagatccactccaacctggag
tacacacccaagtctggagagaagatctcctgtatggtggagcacatcagcctcactgag
cccatgatgtatcactgggacccgtccctgcctgagtctgagaggaataagatagcgatc
ggtgcgtctggtctggtgctgggagccatcttagcattagcaggactgatctactacaag
aagaagtcttctggggtgctctag

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