KEGG   Coregonus clupeaformis (lake whitefish): 121575337
Entry
121575337         CDS       T08357                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain
  KO
K06752  MHC class II antigen
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121575337
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121575337
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121575337
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121575337
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121575337
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121575337
  Exosomal proteins of epithelial cells
   121575337
  Exosomal proteins of breast milk
   121575337
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 Ig_2 I-set C2-set_2
Other DBs
NCBI-GeneID: 121575337
NCBI-ProteinID: XP_041744274
LinkDB
Position
10:21172926..21175689
AA seq 243 aa
MPLCCLNMKSSVIVLILYCQVYAEAKVLHIDLHITGCSDSDGVDMYGLDGEEMWYADFNK
GKGVISQPPFADPFSYVPGTYEQAVGAQGVCKGNLATSIKANKNPPETIAPPHSSIYPRD
DVELGVENTLICHVSGFYPAPVRVRWTRNNQNVTEGVRISTPYPNSDFTLNQFSSLSFTP
EEGDIYGCTVEHKGLTEPLTRIWEPEVSQPSVGPAVFCGVGLTLGLLGVATGTFFLIKGN
QCN
NT seq 732 nt   +upstreamnt  +downstreamnt
atgcctctctgttgtctgaacatgaagagctctgtgattgtcctcatcctctactgtcag
gtgtatgcagaagccaaagttctgcatattgatttacatattactggatgcagtgattca
gatggagtggatatgtatggactggatggtgaagagatgtggtatgcagacttcaacaaa
gggaagggagtgatatcacagcctccatttgcagatccatttagctacgtccctggaact
tatgaacaggctgtaggtgctcagggggtatgcaaaggaaacctggccacatctataaaa
gctaacaagaacccaccagagacaatagcccctcctcacagcagcatctaccccagggat
gatgtggagctgggggtggagaacactctcatctgccacgtcagtgggttctaccctgca
cctgtcagagtcaggtggaccaggaacaatcagaatgtgacagagggagtgcgtatcagc
actccgtaccccaacagtgatttcaccctcaaccagttctccagtctgagcttcacccca
gaggagggagacatctatggctgtaccgtggagcacaagggccttactgagcccctgaca
cggatttgggaacctgaggtgagccagcccagtgtgggtcctgcagtgttctgtggagtg
ggtctgactctggggctgctgggagtggctaccggaacattcttcctcatcaaaggaaac
cagtgcaactga

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