Coregonus clupeaformis (lake whitefish): 121576996
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Entry
121576996 CDS
T08357
Name
(RefSeq) bile acid receptor isoform X1
KO
K08537
farnesoid X receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121576996
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121576996
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121576996
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
121576996
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
MRP-L28
Motif
Other DBs
NCBI-GeneID:
121576996
NCBI-ProteinID:
XP_041746600
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Position
11:complement(2777025..2812370)
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AA seq
482 aa
AA seq
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MNEWVGPDVNVVGPLQIPHSDGFQLSESSHFFDILAEQGSPLLQDQEVLAFTSYPSMQYP
SVEPTMSSLPYYSSQNYYPQYSGEEWYSPIEMYELRKGPLEGSYDAEMEEASAIVPPVCK
RTRHTSHTGRVKGEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYKCKSEGTCE
MDMYMRRKCQECRLRKCKEMGMLSECLLTEIQCKSKRLRKNTKASPGESTGDETEGGDSK
QVTSTTKLSKEKVELSQEQQALLSFIVEAYQKHRIPQDMAKKLLQEQFNADENFLLLTEM
ATSHVQVLVEFTKNIPGFSALDHEDQIALLKGSAVEAMFLRSAQVFTRKLPHGHTEVLED
RIRKSGISEEFITPMFNFYKSIGELQMMQEEHALLTAITILSPDRPYLKDQQAVERLQEP
MLEVLRRFCAMQHPLEPQHFAHLLGRLTELRTLNHHHAEMLTSWRMSDHKFTPLLCEIWD
VQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtgggtgggccccgacgtcaatgtggtgggaccactacagatcccacacagc
gatggattccaattgtccgagagctcacacttctttgatattctggcagagcaagggagc
cctctgctccaggatcaagaggtcttagccttcaccagctatcccagcatgcaatacccc
tcggtggagcccaccatgtcctcccttccatactactccagtcagaattactacccccag
tacagcggcgaggagtggtactcacccatagagatgtatgaactgaggaaaggacccctg
gagggtagctatgatgctgaaatggaagaggcatccgccatagtgcctccggtgtgcaag
aggaccaggcacacttcccacacaggcagggtcaaaggggaggagctgtgtgtggtgtgt
ggggacaaggcatccgggtaccactataacgctctcacctgtgaagggtgtaaaggcttc
ttcagacggagcatcacgaagaacgccgtgtacaagtgcaagagtgaagggacctgtgag
atggacatgtacatgcgcaggaagtgccaggagtgtcgtctccggaagtgcaaggagatg
ggcatgctgtcagagtgtctgctgacagagatccagtgtaagtctaaaaggctgaggaaa
aacaccaaggcctcaccaggagagtccactggggacgagacagaggggggagacagcaag
caggtcacctccaccaccaaactgtcaaaggagaaagttgagctcagtcaagagcagcag
gctcttttgagcttcatcgtagaagcttaccagaaacatcgaatccctcaagacatggcc
aaaaaactgctacaggagcagttcaatgcagacgagaacttcctccttttgacagagatg
gccaccagtcatgttcaagtgctggtggagtttaccaagaacattccaggtttctcagcc
ctggaccatgaggatcagatagctttgttaaagggctcggcagtggaggccatgttcctg
cgctcagcacaggtgtttaccaggaagctaccccatggacacacagaggtgctggaggac
aggatacgcaagagtggaatatcagaggagttcattacacccatgttcaacttctacaaa
agcatcggggaactccagatgatgcaggaagaacacgcccttctcaccgccattaccatc
ctgtcaccagacaggccgtacctgaaggaccagcaggcagtggagaggctgcaggagccc
atgttagaggtgctcaggaggttctgtgcaatgcagcacccgctggagccccagcacttt
gcccatctcctgggccggctgaccgaactgcggaccctcaatcaccaccatgccgagatg
cttacctcttggcgcatgagcgaccacaagttcacccccctcctctgtgagatctgggac
gtacagtga
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