Coregonus clupeaformis (lake whitefish): 121579101
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Entry
121579101 CDS
T08357
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121579101 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121579101 (smg6)
03032 DNA replication proteins [BR:
cclu03032
]
121579101 (smg6)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121579101 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
121579101 (smg6)
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121579101 (smg6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
TPR_2
TPR_12
TPR_17
TPR_11
ABC_tran_CTD
Motif
Other DBs
NCBI-GeneID:
121579101
NCBI-ProteinID:
XP_041749332
LinkDB
All DBs
Position
13:6986004..7027739
Genome browser
AA seq
986 aa
AA seq
DB search
MYLQTGGGYGALHFLDTDDEAAGSPPVRQGEHFHPQQQAVAMAQAFYKYQNSDNPYPYNA
NPNARYPYPYHTMPTGPYQMPPTNGIYPAQFYGEYRGQGYQTGAGSGSGAAAGAGLTPEE
VEQQARGELGRLLRTADSQELQLSNLLSRDRLSADGLDRMAQLRADLLTLYERVILTDIE
FSDSQNLDQALWKNIFYQVIERFRQLLKDPSGDSAPRITIMLFTLLDEGAVFFDALLQKL
QTVFQFKLDDYMDGMAIRARPLRKTVKYALISAQRCLICQGDIARYREQASDSANYGKAR
SWYLKALQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEE
AKRKADQMERRRKQEWEGGSRGPGIRGGGGRGEEGSRVEIWVHPIAQAGAQSSHRGGSES
SRDSEQEGELGNLSASDLNKRFILSFLHAHGKLFTKVGMESFPAVASRVLQEFRALLQHS
PSPLGSTRMLQIITINMFTIHNAQSRGGDGEVRSVLQEQTTALGLAMFSLLVQRCTELLR
DTPAEPFPEEEREQGDEEEGMVRVSAFPLDLRELLPSVKVWSDWMLGHPNQWNPPPCSID
CSPDVWRSLADLCNALARVDHGEAPLYKADGDGGEGDEELRLLLLEEDRLLAGFVPLLAA
PQEPCYIDCTGDTVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSMATSPRPGDAR
SRQDSQTERESDDVIVEAESSVSDGDGDDGSEDDIRELRARRSALTNELAQQQRRREKIQ
AVLQTCGQLELEVRPLFLVPDTNGFIDHLTGLKTLLHSGTYIVVVPLIVITELDGLAKGQ
ESCDGTVGGRGGSGSRGNPGGGGAAHARAVQEKAKVAVAFLERGFEAREPCLRALTSRGS
QLESIAFRSEDTSGQQGNNDDVILSCCLHYCKDEAKNFMPAQRDGPVRLRREVVLLTDDR
NLRVKALTRNVPVRDIPSFLTWAKVG
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgcagacgggcggcggttacggagcgctgcacttcctggatacggacgacgag
gctgcagggagtcccccggtccgccagggggagcacttccacccccagcagcaggccgta
gccatggcccaggccttctacaagtaccagaactcggacaacccttacccttacaacgcc
aaccccaatgcacgctacccatacccctaccacaccatgcccaccggcccctaccagatg
ccccccaccaacggcatttacccggcccagttctatggggagtacaggggccaggggtat
cagactggggctggatccggatccggggctgcagctggagcaggtctgacaccagaggag
gtggagcagcaggccaggggagagctggggagactgctgaggactgcagacagccaggag
ttacaactcagtaaccttctatctagagacagactcagtgctgacggactggaccgcatg
gctcagctcagagctgacctgttgaccctctatgagcgggtgatcctaacagacatagag
ttcagtgacagtcagaacctggaccaggctctatggaaaaacatcttctaccaggttata
gagcgcttcagacagctcctcaaagaccccagcggagactcagccccgcgcatcaccatc
atgctgttcactctgctggacgagggggcggtattctttgatgcgctgctgcagaagctt
cagacggtgtttcagtttaaactggatgattacatggacggcatggccatcagagcacgt
ccactacgcaagacggtgaagtatgctctgatcagcgcccagcggtgtttgatctgtcag
ggggacatcgcccgttaccgggagcaggccagcgactcggctaactacggcaaggcccgc
agctggtacctaaaggccctgcagattgctcctaagaatggacgaccttacaaccagctg
gccctgctggctgtctacacgaaaaggaagttggatgcagtgtattactacatgcgtagc
ctggctgcctccaaccccatcctcactgccaaggagagccttatgagtctgtttgaagag
gccaaacgcaaggcggaccagatggagcgaaggaggaagcaggagtgggagggggggtcc
aggggcccggggatccgaggaggaggaggacggggggaggaggggtccagggtggagatc
tgggttcaccctatcgcccaggcaggggctcagtcgtcacaccgcgggggcagcgagtcc
agcagagactctgaacaggaaggagagctgggcaacctcagcgctagtgatctcaataag
aggttcatactcagcttcctccacgctcacggaaaactcttcactaaagtgggtatggag
tctttcccggcggtggccagtcgtgttctccaggagttccgagcgctgctccaacacagc
ccctcccccctgggcagcacgcgcatgttacagatcatcaccattaacatgttcactata
cacaacgctcagagcagagggggagatggtgaggtgaggtctgtgttacaggagcagaca
acagctctgggtctggccatgttctctctactggtccaacgctgcacagagctgctgaga
gacacacccgcagagcccttcccggaggaggagagagaacagggggatgaggaggagggg
atggtgagagtttctgccttcccattggacctgagggagctgctgcccagcgtcaaggtc
tggtctgattggatgcttggacaccccaaccaatggaatcctccgccttgtagtatagac
tgtagcccggatgtgtggcgtagcctggcagacctgtgtaatgcgttggcacgtgtcgac
cacggcgaggcgccgctgtacaaggcagacggggacggaggggaaggggacgaggagctc
cgcctgctgctgttggaggaggacaggctattggccggcttcgtcccgctgctcgccgcc
ccgcaggaaccctgctacatagactgcaccggggataccgtgatagccgctgactgtaaa
agggtaacggtgttgaagtatttcctggaggctctgtgtggacaggaagagcctctcctg
gcctttaaaggagggaagtatgtctccatggcaacctctccccgccccggcgacgcacgc
agcagacaggactcacagaccgagagagagagtgatgacgtcatcgtggaggcagagtcg
tccgtgtcggacggggacggtgatgatggcagtgaggatgacatccgagagctccgggcc
cgacgcagcgccctcaccaacgaactggctcagcagcagagacgcagggaaaagatacag
gcggtgttacagacgtgtggtcagttggagttagaggtgcgtcctcttttcctggtcccc
gacaccaacggtttcatcgaccaccttacgggcctcaagacactgctgcattctgggact
tacattgtggtggtgcccctcatagtgataacagagttggatggtttggcaaagggccag
gagagctgcgatggcaccgtcggtgggcgtggtggcagtggttctcgtggaaaccctggt
ggtgggggtgcggcccacgcccgggctgtccaggagaaggctaaggttgccgtggcgttt
ctggagcgagggttcgaggccagggagccctgtctcagagcgctgaccagcagaggaagt
caactggagtctatcgccttccggagcgaagacacctccggacaacaggggaacaatgat
gatgtcatcttgtcctgctgtctccactactgcaaagatgaggctaagaacttcatgcct
gcacaaagagacggtccggtgcgcttgcgtcgggaggtggttctcctaacagatgaccgt
aacctgcgagtcaaagccctgaccaggaatgtgccggtcagggacatcccctccttcctc
acctgggccaaagtgggctga
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