Coregonus clupeaformis (lake whitefish): 121579355
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Entry
121579355 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TTC3 isoform X1
KO
K15712
E3 ubiquitin-protein ligase TTC3 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121579355
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121579355
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121579355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TTC3
TTC3_DZIP3_dom
wHTH_TTC3
TTC3_9th
zf-RING_2
zf-rbx1
TPR_16
TPR_2
zf-C3HC4
TPR_11
zf-C3HC4_2
TPR_1
zf-RING_UBOX
zf-RING_5
Prok-RING_1
TPR_17
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
ANAPC3
TPR_19
TPR_8
TPR_9
zf_RING_Vps8_fungal
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
121579355
NCBI-ProteinID:
XP_045080199
LinkDB
All DBs
Position
13:16769925..16825512
Genome browser
AA seq
1904 aa
AA seq
DB search
MLSRGKARKERLTKMSDSDSGPEFVDYDIRHGAKLIYEKDSPFVALQPPDYIYERWNKIP
VCLKKKAAQLMHVSAFWYHILLCRENHNTTRWAVQVGFLDSNYGNDLSLKRLHRIEILEA
ILRAMEKGCLFEDQTRHMIWISNKFNLHVLEVLDDAICWLERTGEPRIKQQVQELGPRGN
CFAALQLIFAEYAHYTQAMGVSRKKIMRELAQGPCQWSIEKSEEMKAKGNDQVQKNKYDA
AVKCYSKAIKYHPENYIIYGNRALCYIRSEKYLKAVGDGKRATLIQPEWAKGHYRYCEAL
FLLGEHKRAVAANEWAQTLCKADPEGMKDLLQQHTKFNIEMESKRRREEESKVGRPNKTA
AKKVSSKRTDSTTRADTTESRQQTDKPASKVEPCTNSTAPENKCSGVKVESLTQPVKAEG
GAHSVDNAEGPKETKSQMADKKSSKSEPIASEKPKGKSRNQHSKMILGRSGDPSMRDLLV
SAVQDAHTALADQRCRNAEQAFSQALVILETSTPKELGLCALDQVVLIYGHASALLEIGQ
PEELAEAQRDFDKIKTFEERKFQCLVFYGIGKVYQKENRFPIALEQFSNSMQMVKKKITP
GKLTWPTTTAIVEETKLDYFKELLEESIEMCKFPPKPDAICRHQNCHGHSKMEIYFTDPD
FKGFIRVVCCQSCKVEYHISCWKKLKVTAFSDKNEKDFLQEICFTPECGGRICHIKIYGS
TGLVKCEFVSLASIEKHRGTAKLRVNQKCSSLKKLKSKEDRKIRRKQCRQDASLTTQDKN
DQMPLENRETIVVEQKASSPTWLSYGDRVLLQISDSKDLFRDKSHNISVLMKNLKPWMDM
DRIKGSELGMSYAGRQPETLGDVVELLLERKNRVWARIFIHSLSGCLDTSPKLHDWAHQL
DSSGLNAAGLFIDRYADHLEQLDLAPLLHFAPLQDMLIEKFGTMPEFFSRLGLTVTEYLK
QAPPQEMRLFIWTLEEHRDQYASCHAALDDYFEIMDGRCLVIKKTENENTIKYPIKTKNR
NRKKKQKEPKASVIVLSGMRGGTSREDEDEDFLEEDSLMFLDPSDPFSVPSHLRDQVTEF
EGQYNNGSRSSHYKRILDNNPDLTKESLYDYFAQILEEYGPLKAQDPLLVGELDNFPPDA
QQKIQEAGGLKPFLLESLRFVMTDNLLGLMKHAVSLQDANTHRMDNLDFIGDIPNRLSLN
PSAMAFLPNSQDSGTRDYDEPIAIIPVWPNLAIGTPLDKSYDNHYPNNLEDLDLYIRDVE
EKGVEAPGKTAAEVQVSTCVALSEVAVNTEPFEGNNGDLSKKEKSNAEFEQQIQQIKQDY
DSVKQRRLKEISALEGELEEINRLIQVTHIELGLFQQKLEEEVKKDQQEKKENQETVKAL
KTEIKELAESQESISKSIRERNKDYETHLNNVLELSNQSAAEKMSLEDEIKRYRDLCAKA
TRRSQGAELSILENRRGIDLRCLYRSLSEARAILAKLKEVALRFPSQILQSATYAWGACV
QEAEEKVCATEVQYQDHMEQVKRGTRLCTLPPVAVPSPPRPPPVPVRCSTTGPTLSLAKI
HSVPEVDPTPSLVPLPLCLPYPGLPPVAYPVLSSVPAIGLGVPLVAPGLRYSAGFTLQTG
QVLGLRFPIRGPLGPEQMLFQPQAHQQLPRHPLHMRGPLYGHPGVPSAPPAPAMAQSVAP
SPGMAGALASATANDPTGHFTRPLLQNQAPRPQAPQPNNVCERIMDRLSVMFPHYSRLVL
YKFIGEIHTANGGCLTALSYDEVINRVAQLILDHQDTTREQLSSVGKGDPGAQLCGTPSC
SDSPASVRSTGTPPTAHVWKRVGAHGHSQAKALNMEDPCIICHEDMSQEDLCVLECRHSF
HRECIKSWLKEQSTCPTCREHALLPEDFPLLPGRIRRGHTPAFS
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atgttgtctcgcggcaaagccaggaaagaacgacttaccaaaatgtcagattcagactct
ggtccagagtttgtggactacgatatcagacacggggcgaaacttatctatgaaaaagac
agtccctttgtagccctgcaacctccagattatatatatgagcgatggaataaaatccct
gtctgtttgaaaaagaaagctgcccagctgatgcatgtatctgccttttggtaccacatt
ctgctttgtcgagagaatcacaacaccacacgctgggctgtgcaagtgggcttcctagac
tcaaattacggcaatgacctgagtctgaagagactgcacaggatagaaatattggaagct
atcctcagagcgatggaaaaaggatgtttatttgaagatcagacgaggcatatgatctgg
ataagcaataagtttaacttgcatgtgctggaggtcctggacgacgcgatatgctggctg
gagcggacaggagagccccgcatcaagcagcaggttcaggagctgggccccagagggaac
tgctttgctgctcttcaactcatcttcgctgagtatgctcactatacacaggccatggga
gtcagtaggaaaaaaattatgcgagagcttgcacagggtccctgccaatggtctattgag
aaaagtgaagagatgaaggctaaaggaaatgatcaggttcagaaaaataagtatgatgca
gcagtcaagtgttactcaaaagccatcaaataccaccctgaaaactacattatctatggg
aacagagcactttgctatattcgtagtgaaaaatatctaaaagctgttggtgatggaaaa
cgagccactttgatacaaccagagtgggcaaagggtcactaccggtactgtgaggcgttg
ttcctccttggggaacacaagcgggcggtggcagccaacgagtgggcccagactctgtgc
aaggctgacccagagggcatgaaggacctgctgcagcaacataccaagttcaacatagag
atggagagcaaacgtcgcagggaagaggagagcaaagttggcagaccgaataaaactgca
gctaagaaagtttcaagtaaaagaacggacagtaccaccagagcagacactacagagtca
cgacaacagactgataaacctgccagtaaggttgagccttgcactaatagcaccgctcct
gagaacaagtgctcaggagtcaaggtggaaagtctgacacagccagtgaaagctgaaggg
ggagcacattcagtggataatgcagaggggcctaaagagacgaaaagtcaaatggctgat
aaaaagagcagcaaatcagagcccatcgcttcagagaaaccgaaagggaagagcagaaac
cagcattcaaagatgatattaggcagatccggagaccccagtatgcgggacttgctggtg
tcagctgtgcaggatgcccacacggccctggccgaccagcgatgccgcaacgcagagcag
gccttctcccaggccctcgtcatcctggagaccagcacaccaaaggaacttggcctctgt
gctcttgaccaagttgtgctgatttatggccatgcctcagctctgttagagattggtcaa
cctgaggaacttgctgaagctcaaagggactttgacaagatcaaaacctttgaagagagg
aagtttcagtgtctggttttttacggcattggaaaggtgtatcagaaggagaaccgattt
ccaattgctctggaacagttttctaattctatgcaaatggttaagaagaagataacacct
ggtaaactgacttggcccaccacaacagctattgttgaggagactaagctggactatttc
aaggagctgctagaggaatccatagagatgtgcaaatttccacctaaaccagatgccatt
tgtcggcatcagaattgccatggccattccaaaatggaaatctacttcacagatccagat
tttaagggtttcattcgggtggtttgctgccaaagctgcaaagtggagtaccatatcagc
tgttggaagaagttgaaagtaacagcattctctgataagaatgaaaaggatttcctgcag
gaaatttgctttactccagaatgtgggggtagaatctgtcatattaaaatatatggttca
acagggcttgtcaaatgtgagtttgtgtctttagcatctattgaaaaacatagaggtaca
gcaaaattgagagtaaatcagaaatgttcaagtctcaagaagttgaaatccaaagaggat
cgtaagatcagacggaagcaatgtaggcaagatgcttctctgactacgcaagacaagaat
gatcagatgcctttggagaaccgggagaccattgtcgtagaacagaaggcttcatccccc
acctggctgtcttacggggaccgtgttctgcttcagatcagcgatagcaaggatctgttc
agggacaagagccacaacatctctgtgttgatgaagaaccttaagccatggatggacatg
gaccggatcaagggaagcgaactgggcatgtcgtatgctgggaggcagccggagacgctg
ggggatgtggtggagctcctcctggaaaggaagaaccgggtgtgggcccgcatctttatc
cacagcctgagcggctgcctggacaccagccccaagctgcacgactgggcccaccaactg
gacagctcaggtctgaatgcagctggactgttcattgaccgttatgcagaccacctggag
cagctggacctagctcctttgctacattttgcccccctgcaggacatgctcatagagaag
tttgggaccatgcctgagttttttagccgtcttggtctgactgtaacggagtacctaaag
caggcccctccccaggagatgaggctgtttatctggactttggaggagcacagagaccag
tacgcctcctgccatgctgcgttggatgactattttgaaataatggatgggcgttgttta
gtgattaaaaagacagagaatgaaaatacaattaaataccctattaagactaagaacaga
aatcgcaaaaagaagcagaaggagccaaaggcgtcggttattgtcctgtcgggaatgaga
ggtggtacctcaagagaggatgaggacgaggattttttagaggaggactctttaatgttt
cttgaccccagtgacccattcagcgttcccagtcatcttcgtgatcaggtgacagagttt
gagggacagtacaacaatggcagccgcagtagccactacaagagaatattggacaacaac
cctgacctgactaaggagagtttgtatgactactttgcccagatcctggaggaatacggt
cccctgaaggcccaggaccccctgctggtgggcgagctggacaacttccctcccgacgcc
cagcaaaagatccaggaggccggtggcctgaagcctttcctcctcgaatcgctgcgcttc
gtcatgactgacaacctcctgggccttatgaaacacgccgtgtcactgcaggatgccaac
actcacagaatggacaatctggacttcataggggatatccccaacagactctccctaaac
ccttctgctatggcgtttctcccaaactcccaagattctggaactagggattatgatgag
cctattgctattatccctgtgtggcctaacctggccattggaactccattggacaagtca
tatgataaccattatccaaataaccttgaggatcttgacctttatattagagatgtagag
gaaaagggagtcgaggcacctggaaagactgcagcagaagtacaggtatcaacttgtgtc
gccttgagtgaagtggctgttaacacagagccttttgaagggaataatggagacctgtcc
aagaaagagaagagtaatgcagagtttgagcagcagatccagcaaataaagcaggactac
gactctgtgaagcaaagacgcctaaaggagatctctgccctagaaggagagctagaggaa
atcaaccgtttaatacaggtcacccatatagagctgggcctgttccagcagaagctggag
gaggaggtgaagaaggaccaacaggagaagaaagagaaccaggagaccgtgaaggcctta
aagactgagataaaggagctggcggagtcacaggagagcatttctaagagcatccgtgag
aggaacaaggactatgagacacacctgaataatgtcctggaactgagtaaccaatcagct
gctgagaagatgagcctggaggatgagatcaagaggtacagagacctatgtgctaaggca
accaggaggtctcagggagcagagctgtctatattagagaaccggcgtggcattgacctg
cgctgcctctacaggtctctgtctgaagccagggccatccttgccaagctcaaggaagtg
gcactcagattcccttcccaaattctgcagtcagccacatatgcctggggagcatgtgtt
caagaagcggaagagaaagtctgtgcaactgaggtgcagtaccaggatcatatggagcag
gtgaagagggggaccaggctgtgtactctgcccccagtggctgtccccagccccccgcgg
cccccacctgtaccagtaagatgcagcacaactgggcctactttaagtttagcaaagatc
cactcagtcccagaggtagacccaaccccgtctctggtccccctccccctctgtctccca
taccccggcctcccccctgtcgcctacccagtcctctcctctgtccccgccatcggcctg
ggcgttcccctagtggcgccaggcttgagatacagcgcaggcttcacactgcagacagga
caggtgctggggctccgcttccccatcagagggcccctggggccagagcagatgctattc
caaccacaggctcaccagcagctccctcgccacccgctgcacatgagaggccccctctat
ggccacccaggggtgcccagtgcccctccggccccagccatggctcagagtgttgcaccg
tcccccggcatggctggagctctagctagtgctactgctaacgatcctaccggccatttc
acgaggcctctccttcagaaccaggctcccaggccacaggccccacaacccaacaatgtg
tgcgagagaatcatggaccgcctcagcgtcatgttccctcactatagcaggctcgtgctg
tacaagttcattggggagatacacacagccaacggaggctgcctgaccgccctgtcctat
gatgaggttatcaacagagtggcccagctcatcctggaccaccaggacaccaccagggag
cagctgagcagtgtgggtaaaggtgaccccggggcccagctgtgtgggaccccttcttgc
tccgactcccctgcctcagtccgctccactggaacccctcccaccgcccacgtctggaag
agagtgggcgcccacggacactcccaggccaaggcgctgaacatggaggatccctgtatc
atctgccatgaagacatgtcccaggaggacctgtgtgtgctggagtgcagacacagcttc
cacagagagtgtattaagtcatggctgaaggagcagagcacctgtcccacctgcagagag
cacgctctcctgcccgaggacttccctctgctgcctggcagaatccgcaggggccacacg
cccgccttctcctaa
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integrated database retrieval system
