Coregonus clupeaformis (lake whitefish): 121579656
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Entry
121579656 CDS
T08357
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
cclu04540
Gap junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121579656
04020 Calcium signaling pathway
121579656
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121579656
04540 Gap junction
121579656
09142 Cell motility
04810 Regulation of actin cytoskeleton
121579656
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121579656
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cclu04090
]
121579656
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121579656
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
121579656
CD molecules [BR:
cclu04090
]
Proteins
121579656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
C2-set_2
Ig_VEGFR-1-like_5th
Haspin_kinase
IMS_C
Motif
Other DBs
NCBI-GeneID:
121579656
NCBI-ProteinID:
XP_041750373
LinkDB
All DBs
Position
13:47490547..47512343
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AA seq
1091 aa
AA seq
DB search
MELGLAKALPSVAIFAVLLQFCPEGFSLELSPSEKEVILSTNSSFMVVCSGWSKVTWKSP
HNPSLEGVAVEDRGSTSVLVLHNVTWRHSGNYVCEEPSTEETKDISVFVPDPEEWFVPLQ
PALVMKEGQEGTIPCVVSDPSINVTLYERASKDPVEGTYDPSKGFTAILKDSSYICRGAM
NGEEKASQVYYVYSIVVPKSMNAFMTLSKTVLKQGEALMVNCTVEDAEIVYFKWDFPRKE
MIEPLTDFLTGNREFRIRSFLNISSATLEDSGQYICRVQDTVSGQSAMDNLTVTILERGF
VALEPSINHNVSALQFESIELTVQIEAYPKPQVLWTRDNTTLTGETVSMVTRQVHETSYL
STLTLVRVRMEQRGLYTVQVANEDEVKEITFDLQVKAPPKIINLSDQHMDQGHGVLCVTE
GVPTPTIHWYSCESIGKCSNKTTAWKPLSADPENVSIQMNVSYIEASGVNHVRSLLTFQT
MGSITSVRCEARNEKGRRAWDIKLVSNSLFSQVAVLAAVLTLVVIAVIFLIILIALWRKK
PRYEIRWKVIESVSSDGHAYTYMDPMDLPYDCAWEVPRDNLVLGHTLGSGAFGRVVEATT
YGLGHSQSTTKVAVKMLKSTARTSETRALISELKIMSHLGPHLNIVNLLGACTKRGPIYL
ITEYCRYGDLVDYLHRNKHTFLQYYADRNRRDADMCRNSTESAVQIQGKSESDGGYMDMT
KEDSLNYVPMQELSDNIKYADIEPSVYETPYHQDNNYQRQGQERADVALSISDSPILSYT
DLVGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDVMNDSNYIAKG
NTFLPLKWMAPESIFQNLYTTLSDVWSFGILLSEIFTLGGTPYPDIPMNEQFYTALKRGY
RMPKPTHATDEIYDVMCKCWDEKFEKRPPFSSLVHLMGNLLTDVYKKKYTQVNESFLKSD
RSKPTPVGNPAVSPDVQSSGDRAGQETEETGEIGETGKEAGPSQTDYIIAIPDIHVVEEA
EASGEVLDTATQSTSSPPSTTDQTDTDTASLNGPEASLEEPVPTEEEVPAPTQEDKLPQS
PCTPEVEESFL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagctgggcttggcaaaggctctgccgtcggtggccatctttgcagtgctgctgcag
ttttgtccagagggcttcagtttggagctcagccccagtgagaaggaggtcatactgagc
accaactcctccttcatggtggtctgttctggttggagcaaggtgacctggaagtctccc
cacaaccccagcctggagggagtggctgtggaggacaggggatccaccagtgtgctggtc
ctccacaacgtcacctggaggcactctgggaactatgtctgtgaagagccctctacagag
gagaccaaggacatatcagtgtttgtaccagaccctgaggaatggtttgttcccctgcag
ccagcactagtgatgaaggagggacaggaaggcaccattccctgcgtggtgtctgaccct
agcattaacgtgaccctgtacgagagggccagcaaggaccctgtggagggaacatatgac
cccagcaaagggttcaccgccatcctgaaagatagctcctacatctgccgaggtgccatg
aacggagaggagaaggcgtcccaggtgtattatgtctacagcattgtggtccccaaatcc
atgaacgccttcatgactctctcaaagactgtgctgaaacaaggcgaggccttaatggtt
aattgtactgtagaagacgcggagatagtttacttcaaatgggattttcctcgtaaagag
atgattgagccactgacagactttctaacggggaaccgggagtttagaattcgttccttc
ttgaacatctccagtgctactctggaggactctggccagtacatctgccgggtacaggac
accgtttcaggacagtcagccatggataatctcactgtcactattctggaacggggcttt
gtggctttggaaccctccatcaaccacaatgtttcagcgctgcagtttgagagcattgag
ctcacagtgcagattgaagcgtatcccaaacctcaggtgctctggaccagagacaacacc
accctcactggggaaacggtatccatggtcaccagacaggtgcatgagaccagttacctc
agtactctgaccttggtaagggtcaggatggaacagaggggcctctacactgtccaggtg
gccaacgaagacgaagtcaaggagataacctttgatcttcaagtcaaggctcccccgaag
ataataaatctgtctgaccagcacatggaccagggccacggtgtactctgtgtcacagag
ggggtccccacacccaccattcactggtacagctgtgaaagcattggaaaatgcagtaat
aagaccacagcatggaagcctctgtcggctgacccagagaacgtcagcatccagatgaat
gtgagctacatcgaggcctcaggggtcaaccacgtccgcagccttttgaccttccagacc
atggggagtattacgtcagtgcgctgtgaagcccgcaacgagaaaggacgcagggcctgg
gacatcaaactagtctccaactctctgttctcccaggtggctgtcttggctgcagtgtta
accctggtggtcatcgccgtcatcttcctcatcatcctcatcgccctctggagaaagaag
ccccggtatgagatccgttggaaggtgatcgagtcagtgagctcagatggccatgcgtac
acctacatggaccccatggacttgccatatgactgtgcatgggaggtgccccgagacaac
ctggtcctgggtcacactctgggttctggagcgttcgggagggtcgtggaggccacaaca
tatggccttggtcactcccagtccaccaccaaagtggctgtgaagatgctcaagtccaca
gcaaggacaagtgagactcgggctctgatatcagagctgaagataatgagtcaccttggg
ccccatctaaacatcgtcaacctactgggggcctgtactaaacgaggtcctatttacctc
ataactgagtactgtcgctatggtgacctggttgactaccttcaccgcaacaagcacacc
ttcctgcagtactacgcagacagaaaccgcagggatgctgatatgtgcaggaacagcaca
gagagtgcagtccaaatccaaggaaaaagtgagagcgatgggggttacatggatatgacc
aaggaagattctttaaattatgtccccatgcaagagctgagcgacaacatcaagtatgca
gacatcgagccttcagtctatgagacgccttaccatcaggacaacaactaccaaagacaa
ggccaagagagagcagacgtcgcgttgtctatcagtgactccccaattctgagctacaca
gatctggtgggctttagctaccaagtggctaagggcatggactttctggcatccaagaat
tgtgttcatcgtgacctggctgccagaaacgttctcatctgtgagggaaagctggtgaag
atctgtgactttggcctggcccgtgatgtcatgaacgactccaactacatagccaaaggc
aacacattcctgccactgaagtggatggctccagagagtatcttccagaacctctacaca
accttgagcgatgtttggtcttttggcattctgctttcagagatctttactctaggagga
acgccctatcctgacattcccatgaatgaacagttctacactgccttgaagagaggctac
aggatgcccaaacccactcatgctacagacgagatctacgatgtcatgtgcaagtgttgg
gatgagaaattcgagaagaggccaccgttctcctctctggttcatttgatgggaaacctg
ctgactgacgtttacaaaaagaaatacacccaggtgaatgagagctttctgaagagcgac
aggtccaaacccacaccagtagggaacccggctgtgtctccagatgtccagtcctcaggg
gaccgagcagggcaggagacagaggagacaggggagataggggagactgggaaggaggct
ggcccctcccagactgactacataatcgccatcccagatatccatgtagtcgaagaggca
gaagcaagtggtgaggtgctggacaccgccacacagagtacatcaagtcctccaagcaca
acggaccagaccgatactgacacagcctccctaaatgggccagaagcctccctagaagaa
ccagtacccacagaggaagaggtgcctgcccccacgcaagaagacaagctcccccagtct
ccatgtacccctgaagtggaggagagtttcctgtag
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