Coregonus clupeaformis (lake whitefish): 121579719
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Entry
121579719 CDS
T08357
Symbol
fbn1
Name
(RefSeq) LOW QUALITY PROTEIN: fibrillin-1
KO
K06825
fibrillin 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04350
TGF-beta signaling pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121579719 (fbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121579719 (fbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121579719 (fbn1)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121579719 (fbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
hEGF
EGF
FXa_inhibition
TB
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
EGF_MSP1_1
EGF_2
Motif
Other DBs
NCBI-GeneID:
121579719
NCBI-ProteinID:
XP_045079481
LinkDB
All DBs
Position
1:93630890..93723256
Genome browser
AA seq
2751 aa
AA seq
DB search
MCRGRLVRLAVGLVAVLSLWTEPGGAEAEAGAGQAGGTGGEATLTEGELVSLPLLTVDSE
PARQTPTQPRASRAKRRGGGTDVLKGPNVCGSRFNAYCCPGWKTLTGGNQCIVPICRSSC
GDGFCSRPNMCTCPTGSIAPSCGSKSVQNCNIRCMNGGSCAEDHCQCQKGYVGNHCGQPV
CETGCQNGGRCVAPNRCVCTYGFTGAQCERDYRTGPCFASVSNQMCQGQLTGIVCTKTLC
CATVGRAWGHPCEMCPAQPHPCRRGFIPNHRTGACQDVDECQAIPGLCQGGNCINTVGSF
ECKCPAGHKFNEITQKCEDLDECSNIPGLCSGGECSNTVGSYFCRCPQGYYTPVDGSRCI
DARGGYCYASLLNGRCANQNSQLLTKIQCCCDSGRCWSDGSNPELCPMTGTDEHQKLCTQ
VQTGPGGGPLPGGGGPLPGGGGEIPGGPQVPGINLRPPYPGVPIPFQPPPREGLYPGPII
IQSQNISTSITNMCEVYRNLCLNGRCVPTPGSYRCDCNMGFRLDSRGECIDDDECERNPC
VNGECVNTAGSYFCQCPAGFQSTATRTECRDLDECVTNGRICNNGRCVNTEGSFHCVCNA
GFDISTDGKNCQDMDECLIRNMCLNGMCMNEEGSFKCICKPGFLLNPTGRFCVDIDECET
PGMCMNGHCVNTEGSFRCECMAGLAVGLDGRVCVDTHMRSTCYGGYKRGQSVKPFFGAVT
KSECCCASVEYAFGEPGQPCPPQSSAEFLALCINGPGVTSDGRDINECALDPDICQNGVC
ENMLRTYKCNCNMGFEVDTTGKNCVDIDECAVNRLLCDNGLCRNTPGSFTCHCPTGFLFH
AETDVCEDVDECESKPCVNGDCKNSPGSYACLCSAGSTLDASKTQCIETSKGTCWLKVIN
GRCEININGATLRSHCCSTLGEAWGSPCAKCEPDQFCTKGYARVRGTICEDVNECEVFPG
VCINGKCVNTVGSFICQCPSGMTVDATGRTCIDLRTEQCYLSHEDERCGAPIPGRHRVDA
CCCSVGVAWGPECDECPEKGSQEYSQLCPRGPGFANRGDFINGRPFLKDINECKMIHSLC
SNGKCRNTIGSFRCRCDNGFALDSDERNCTDIDECRISPDLCGQGTCVNTGGDFECECFE
GYESGFMMMKNCMDIDECERNPLLCRGGECVNNEGSFQCVCPDGHEIAPDGSACLDINEC
ELSEKLCRNGQCVNMIGRYQCSCDTGYKSTENRLACVDIDECTIQNGGCETFCTNSEGSY
ECSCRSGYALMPDLRTCTDIDECEDSPDVCDGGQCTNIPGEYQCLCFDGFMSSEDMKTCL
DVDECELNPNICLSGNCENSKGSFICHCDKGYSVRKGTTGCTDINECEIGAHNCDRHASC
TNTAGSFKCSCAPGWIGDGIKCTDLDECSNGTHMCSNNADCLNTMGSYRCHCKDGFSGDG
FYCSDSDECADNVNLCESGNCLNVPGGYRCECDMGFIPTPDGKACEDIDECTFADICVNG
RCQNIPGLFRCQCSIGYELDRSGGNCTDINECADPTTCISGLCVNTPGSYICNCPQDFEL
NPTRVGCVDTRSGDCYLDVRMRGDASESLVCSNEIGVAVSKASCCCSLGQAWGTPCEACP
PLNSSEYKTLCPGGEGFRPNPITVILEDINECQELPGLCQGGHCINTFGSFQCECPKGFQ
LNEENRVCEDVNECERPGICGPGQCYNTIGNYTCICPVDYMQVNGGNNCMDMRKSFCYRN
FYSDNGTCDGELTFNMTKKMCCCSYNIGRAWNRPCEQCPVPSTNEFAILCGSERPGYYID
IYTGQVIDIDECREIPGVCENGVCINMIGSFRCECPMGFLYNDKLLICEDIDECQNGPVC
QQNAGCLNMPGSYRCECKPGYRFTPTGQCLDRNECVENPGVCSPGQCIDTLGSYRCICPN
GFKATSDLAMCIDVDECERQPCGNGTCKNTVGSYNCLCYPGFQLSHNNDCIDTDECSSQR
GLCRNGNCINTLGSFVCVCRDGYELSADGRICVDINECAVNPGTCGPGTCQNLDGSYRCI
CPLGYYIQDETCEDIDECSQTPDICLFGTCSNTEGSFTCVCPAGFQLSSSGRRCVDVRVN
YCYTKFESRRCMAPKPLNTTKADCCCSAMPGQGWGDPCEICPGKNEEAFMSLCHAVGQVF
GPDDQPIDIDECTTNPNICNNGQCINTDGSFRCECPFGFRLDTSGINCEDTNECDLGNPC
GNGTCTNVIGAFECACDEGFEPGPMMSCEDVNECSQNPLLCAFRCVNVIGSYECKCPTGY
VLREDKRMCKDQNECEDGLDDCESRGMRCKNLIGTYMCICNPGYTRAPNGEGCIDLNECS
AKPGICENGRCENTVGSYRCRCDQGFSANPTQTECIDNRQGLCFTEVLTTLCQMQSSSRN
SVTKSECCCDGGRGWGSNCELCPLPGTTQYKKMCPLGPGYTTDGKDIDECRVMGNLCVNG
QCVNSLGSYSCVCKTGYTTDITGTLCVDMDECVQAPKPCNFICKDTEGSYLCSCPRGYIL
QEDGKSCRDLDECQSKQHNCQFLCVNTIGGFTCKCPPGFTQHHTACIDNNECASDPALCG
SNGVCQNSPGSFNCECTRGFSMDPNGQSCEDMDECDGNHRCQHGCQNLVGGYRCSCPQGY
LQHYQWNQCVDENECQNTQICGGASCHNTLGSFRCLCPTGFNYGDQGGCSDINECSSSSN
PCNYGCSNTDGGYLCGCPPGYYRAGQGHCVSGVGFGSGVSLGQGGGGGGGG
NT seq
8254 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgggggcggctggtgaggctggcggtgggtctggtggcggtcctgtcgctgtgg
acggagcctggcggggctgaggctgaggctggggctgggcaggctgggggaaccggagga
gaagctacacttaccgaaggagagctggtgtctttgccgttattaacggtagacagcgag
ccggccagacagacaccgacccaaccaagagccagccgggccaagcggaggggaggaggg
acagacgtcctcaaagggcctaatgtgtgtggctctcgtttcaacgcctactgctgtcca
ggatggaaaactctgaccgggggcaaccagtgcatcgtccccatctgtcggagctcgtgt
ggagacggtttctgctccagacccaacatgtgtacctgtcccaccggatccatcgctcct
tcttgtggatccaagtcagtccaaaactgtaacatccgctgtatgaacggtgggagctgt
gctgaggaccactgccagtgtcagaaaggatacgtgggaaaccactgtggtcaaccggtg
tgtgagacaggttgtcagaatggaggacggtgtgtggctcctaaccgctgtgtttgtacc
tacggcttcacgggggcacagtgtgagagagactaccgtacagggccgtgctttgcatcc
gtgagtaaccagatgtgccagggccagctgacgggcatcgtgtgtaccaagacgctgtgc
tgtgccaccgtggggagggcatggggacacccctgtgagatgtgccccgcccagcctcac
ccctgcaggagaggatttatacccaaccatcgcaccggggcctgccaagatgtggatgag
tgccaggccatcccaggtctgtgtcagggtggtaactgtatcaacactgttggatcattc
gagtgtaagtgtcctgctggacacaagttcaacgagatcacacagaaatgtgaagatcta
gatgagtgttctaacatcccaggcttgtgtagtggaggagagtgttccaacacggtgggc
agttacttctgcaggtgtcctcagggctactacactccagtggatggctccaggtgtata
gatgcacggggtgggtactgctatgccagcctgctgaacgggcgttgtgccaaccagaac
tcccagctgctgaccaagatacagtgctgctgtgacagcgggcgctgctggtcagacgga
tccaatcccgagttgtgccccatgacggggactgatgagcaccagaagctgtgcacacag
gtgcagaccggtccagggggggggcctctcccaggtgggggggggcctctcccaggcggg
ggaggggaaataccaggaggtccccaggtcccaggtatcaacctaagaccaccctaccca
ggcgtaccaatccctttccagcctccgcctagagaaggtctataccctggacccatcatc
atccagagccagaacatcagtaccagcattactaacatgtgtgaggtgtacaggaacctg
tgtctgaacggccgctgtgtccccacccctggaagctaccgctgtgactgtaacatgggc
ttcagactagactcacgaggagagtgtatcgatgatgatgagtgtgagcggaacccgtgt
gtgaacggagagtgtgtgaacacggctggatcctacttctgccagtgtcctgctggcttc
cagtccactgctaccaggacagagtgcagagacctggatgagtgtgtgaccaacggtcgt
atctgtaacaacggaaggtgtgtgaacactgaggggagcttccactgtgtttgcaacgcc
ggctttgacatctctactgatggaaagaactgtcaagacatggatgagtgtctgatcagg
aacatgtgtttgaatgggatgtgcatgaacgaagagggaagctttaaatgtatctgtaaa
cctggcttcctgctcaacccaaccggacgcttttgtgtagacattgatgagtgtgagact
ccagggatgtgtatgaacggccactgtgtgaacacggaggggtcgttcaggtgtgagtgt
atggctggtttggctgtgggtctggatggacgcgtctgtgtcgacacacatatgcgcagc
acgtgttacggaggctacaagcggggacagagtgtgaagccattcttcggagccgtgacc
aagtcagagtgctgctgtgccagcgtggagtacgcctttggagagcccggccaaccatgc
ccgccccaaagctcagctgagttcctggctctgtgtattaacggccccggcgtcaccagc
gatggcagagatatcaatgagtgtgctctggacccggacatctgtcagaacggtgtgtgt
gaaaacatgctgaggacctataagtgtaactgcaacatgggcttcgaggtggacaccact
ggcaaaaactgtgttgacatagatgagtgtgcagtgaacaggctactgtgtgacaacggc
ctgtgcaggaacactccaggtagtttcacctgccactgtcccaccggcttcctgttccac
gctgagacggatgtctgcgaagacgttgatgagtgtgagtcgaagccgtgtgtgaacggg
gactgtaagaacagcccggggtcctacgcgtgtctctgctcagcaggcagcacgctggac
gcctctaaaacacagtgtatagagaccagtaaaggcacatgttggctgaaggtgattaac
ggacgctgtgagatcaacatcaacggagccactctgagatcccactgctgctccacactg
ggagaggcctggggaagcccctgtgccaagtgtgaaccagatcagttctgcactaagggt
tatgccagagtcagagggaccatctgtgaagatgttaatgagtgtgaggtgtttccgggg
gtgtgtatcaatgggaagtgtgtgaacaccgtgggctccttcatctgccagtgtccctct
gggatgactgtcgacgccaccggacggacatgtatagacctgcgtacggagcagtgttat
ctgagccacgaggatgaacgttgcggagcccctatcccgggtcgtcaccgtgtggatgcg
tgctgctgctcggtgggtgtggcctggggcccggaatgtgacgagtgtccggagaaaggc
tctcaggagtacagccagctctgtcccaggggacccggcttcgctaacagaggagacttc
attaacggacggcccttcctcaaagatataaacgagtgtaagatgatccacagcttgtgc
tccaatgggaagtgtaggaacaccatcggtagtttccgttgtcgctgtgacaacggcttc
gctctggactctgatgagaggaactgtacagacatcgacgagtgccgtatctctccagac
ctgtgcggtcagggcacatgtgtgaacacgggtggggacttcgagtgtgaatgttttgaa
ggttacgagagcggcttcatgatgatgaagaactgcatggacattgatgagtgtgagcgg
aaccctctgctgtgtcgcggtggtgagtgtgtgaacaatgagggtagcttccagtgtgtg
tgtcccgacggacacgagatcgcccccgacggatccgcctgtctcgatattaatgagtgt
gaactgagtgagaagctgtgtcgaaacggtcagtgtgtgaatatgattggacgctaccag
tgttcgtgtgatactggatacaaatccacagagaacagactggcctgtgtcgacattgat
gagtgtacgatccagaacggaggttgtgagacattctgtaccaactcagaggggagctat
gagtgcagctgtcgctctggatacgccctgatgccagacctcaggacctgcactgacatc
gatgagtgtgaggacagtccagacgtctgtgacggaggccagtgtaccaacattccagga
gagtaccagtgtctctgcttcgatggattcatgtcttctgaagatatgaagacctgtctg
gatgtggatgagtgtgagctgaaccctaacatctgtctgagtgggaactgtgaaaatagc
aagggatcctttatctgccactgtgacaagggctactccgtacgcaagggaaccaccggc
tgcacagatattaatgagtgtgagatcggggcccataactgtgacagacatgcctcatgc
accaacacggctggcagcttcaagtgtagctgtgctccgggatggattggagacgggatc
aaatgcacagacctggatgagtgttccaacgggacccacatgtgcagcaacaacgcagac
tgtctgaacaccatgggatcctaccgctgccactgcaaagacggattctctggggacggc
ttctactgctcagacagcgatgaatgtgcggataacgtgaacctgtgtgagagcggcaac
tgtctgaatgttcctggaggctaccgctgcgagtgtgacatgggcttcatcccaaccccg
gacggaaaagcctgcgaggacatagacgagtgtacatttgccgatatctgtgtgaatgga
aggtgtcagaacattccggggctgttcaggtgtcagtgtagcatcggctatgagctggac
aggagtggaggcaactgcacagacattaatgagtgtgctgacccgaccacctgtatcagt
gggctgtgtgtcaacaccccaggtagctacatctgtaactgtcctcaagacttcgaactc
aaccccacacgcgtgggttgcgtagacactcgttctggtgactgctatctggacgtgcgg
atgcggggggatgcgtctgagagtttggtctgttccaatgagatcggtgtggcggtgtcc
aaagcctcctgctgctgttctctagggcaggcctggggaacaccctgcgaagcctgccct
cctctcaactcctcggagtacaagacgttgtgtcctggaggagagggattcagacctaac
cccatcactgtcatactggaagacatcaatgagtgccaggagctgccaggcctgtgtcaa
ggaggacactgcatcaacaccttcggtagcttccagtgtgaatgtcccaaaggcttccaa
ctcaacgaggagaacagagtctgtgaagatgttaatgagtgtgagcgtccaggtatctgt
ggaccaggccagtgttacaacaccataggaaactacacctgtatctgccctgtggactac
atgcaggtcaatggaggaaacaactgtatggacatgaggaagagtttctgctacaggaac
ttctactctgacaacgggacgtgtgacggagagttgaccttcaacatgaccaagaagatg
tgctgctgctcctacaacatcggacgggcctggaacagaccctgtgaacagtgtcctgta
cccagcaccaatgagtttgccattctgtgtggaagtgagagaccaggatactacattgat
atctacacaggacaggtcatcgacatcgatgagtgcagggaaatcccaggtgtgtgtgag
aacggcgtgtgtatcaacatgattggcagcttcaggtgtgagtgtccaatgggcttcctg
tacaatgacaagctgcttatctgtgaagacattgatgagtgtcagaatgggccagtgtgc
cagcagaatgcaggctgtctcaacatgcctggtagttaccgctgtgaatgtaaacctgga
taccgcttcacccccactggacagtgtctggatcgtaatgagtgtgtggagaacccagga
gtgtgtagtccaggccagtgtattgatacgttgggaagctatcgctgtatctgccccaat
ggtttcaaggctacatcagacctggccatgtgtatcgatgtggatgagtgtgagagacag
ccgtgtgggaacggcacctgtaagaacacagtgggatcctataactgcctgtgttaccct
ggctttcagctctcacacaacaatgactgcatagatactgatgagtgttcgagccaaaga
gggctgtgtagaaacgggaactgtattaacaccctgggctccttcgtgtgtgtgtgtcgc
gacggctacgaactcagcgccgacggaagaatttgtgttgacatcaatgagtgtgcagtg
aaccctgggacttgtggtccaggcacctgtcagaatctggacggctcctacaggtgtatc
tgcccacttggctactacatacaggacgagacctgtgaagatattgatgagtgttctcag
accccagacatctgtctgtttgggacctgctccaacactgaaggcagcttcacctgtgtg
tgtcctgccggctttcagctgtcctcctcaggacgcagatgcgtggatgtccgtgtgaac
tactgttatactaagtttgagagtcgtcgctgcatggcccctaagcctctgaacaccact
aaagcggactgttgctgtagtgccatgcctggtcagggctggggagacccctgtgagatc
tgccccggcaagaatgaggaggcgtttatgtctctctgccatgcggttggacaggtgttt
ggccctgatgaccagcccatagacattgatgagtgcaccaccaaccccaacatctgcaat
aacggtcagtgtatcaacacggacgggtcgttccgatgtgagtgtccatttggcttccga
ctcgacacctcagggatcaactgtgaagatactaatgagtgtgacctggggaacccatgt
ggaaacggaacgtgcactaacgtgattggagcgtttgagtgtgcatgtgatgaaggcttc
gaacccggacccatgatgtcttgtgaagatgtgaacgagtgttcacagaatcctttgctg
tgtgcgttccgctgcgtgaacgtgattggttcctatgagtgtaaatgtccgacgggctac
gtgctgcgagaggacaagagaatgtgcaaagaccagaatgagtgtgaggatgggctggat
gactgtgagagcagagggatgcgctgtaagaacctcatcggaacctacatgtgtatctgt
aaccctggttacacacgcgcccctaacggagagggctgtatagatctgaatgagtgctct
gctaagccaggtatctgtgagaacggtcgttgtgagaacacggttggaagctatcgctgc
aggtgtgaccaaggcttcagcgccaaccctacacagactgaatgtatagataaccgccag
ggcctgtgtttcacggaggtgttgactacattgtgccagatgcagtccagtagcaggaac
agtgtgactaagtctgagtgttgctgtgatggaggacgaggctggggctctaactgtgag
ctgtgtcctctacctgggaccacacagtacaaaaagatgtgtccactggggcccggatac
acaacagacggcaaagacatagatgagtgtcgtgtgatggggaacctgtgtgtgaacgga
cagtgtgtcaacagcctgggctcctacagctgtgtgtgtaaaactggatacaccacagat
atcactggcaccctgtgtgtggatatggatgagtgtgtgcaggctcctaagccgtgtaac
ttcatctgtaaggacacagagggaagctacctctgttcctgtccccgaggatacatacta
caggaggacggcaagagctgtcgagatctggatgagtgtcagagcaaacagcacaactgt
cagttcctgtgtgtgaacaccattggaggattcacctgcaaatgtcctccaggcttcacc
cagcaccatactgcctgcatagataataatgaatgtgcgtcggaccctgctctgtgtggt
tcgaatggagtgtgtcagaacagcccaggcagcttcaactgcgagtgtactagaggattc
tcaatggaccccaatggacagagctgtgaagatatggatgagtgtgatggtaaccatcgt
tgtcaacatggctgtcagaacctggtgggagggtacaggtgtagctgtcctcagggatac
ctacaacactatcaatggaaccagtgtgtcgatgagaacgagtgccagaacactcagatc
tgtgggggagcgtcgtgtcataacaccctagggagcttccgctgcctctgtcccactggg
ttcaactacggagaccagggggggtgtagtgacatcaacgagtgctcctcgtcctctaat
ccatgtaactacggctgttccaacacagacggagggtatctctgtggctgtccgcctgga
tactatcgcgctggacaggggcactgtgtgtcaggtgtgggctttggtagcggtgtgagt
ctgggccagggaggaggaggaggaggaggaggag
DBGET
integrated database retrieval system
