Coregonus clupeaformis (lake whitefish): 121579882
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Entry
121579882 CDS
T08357
Name
(RefSeq) protocadherin gamma-C5-like isoform X2
KO
K16497
protocadherin gamma subfamily C
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121579882
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121579882
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_FAT4_N
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121579882
NCBI-ProteinID:
XP_041750767
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Position
13:39612813..39802326
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AA seq
1000 aa
AA seq
DB search
MEMRILMKIKVFLWRGLLLSFVLVKTIEAQTRYTIPEELNVGSVVGNIAKDLGLQVSEIS
DRKLRIASEGGKQYFSVDLGKGELFVNERIDRESLCGGNANCLLPLEAIIENPLQLYRVE
IEIQDINDNSPVFQSNINVLNIAEHTLPGARFRLESAQDPDVGSNSLRTYTLSKNEHFVL
DIKTNKDGSKVSELILEKVLDREKQSVHSLLLTAVDGGNPARSGTAEIIIRVQDINDNAP
IFEESGYDIQVVENTQPGTIVVTVKAVDRDDGVNREIVYSFGPHTSELLQNLLSVDPQTG
EIKVKGEIDYEERNSFKMDVLATDKGIPPMQGLCTIHIEIMDLNDNSPEIILKSQPSPVR
EDAPVGTVVALISAKDIDSGENGKVYLNIAPGLPFKLKHSVSNNYALVTDSSLDRETNPE
YTFEIKASDSGTPSLNSRKTINVRILDVNDNPPVFSQPSYTVYVRENNAAGSIMCSVSAS
DPDIGENAKIYFSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDH
GSPSLNSNATVHVFILDQNDNAPAVIYPSAVMGSVSHQKMPRSAKAGHLTTKISAVDADS
GHNAWISYRLAEATDSSLFSVNLYTGEVRTKRPVSEQDDSSQSLLIEIKDNGEPAQSTTV
TVNILLEDGLHEPISDFRQKTAEPIMRNSKITFYLIISLASVSVLSLLTFLILVAKCVRN
SRNSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSE
FSDFTLVKPSSTTDLKEMINVLDASLPDSAWTFESQQQKPPNNDWRFTQQGQRPGPSGQY
TLVPHYSTHRSNNTGTTDRLNNGTYRYSTSTQQRWTPYGKARAGPHPEGAGGAVVGTGPW
PNPPTEAEQLQALMAAANEVSDATATLGPRYNAQFPMQHVPDYRQNVYIPGSTATLTANP
QQMMPQQALQGPPQVIPQVDIPNAGQTPASKKKSTKKDKK
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaggattctaatgaagattaaggtatttctatggcgggggcttctgctttcc
ttcgtcctggtgaagacaatagaagcgcagacgcgctacaccatccccgaggagctgaat
gtgggatccgttgttgggaatatagctaaggatctgggtttgcaagtgtctgagatttcc
gatcgtaaacttagaatagcttccgagggtggtaagcagtatttcagtgtggatttggga
aaaggcgagctctttgttaatgagaggatagacagagaaagtctgtgtggaggaaatgcc
aattgtctgttgcctttagaggctattatagaaaacccactacagttgtatcgtgttgag
atcgaaatacaggatataaatgacaattccccagtatttcaaagcaatataaatgtttta
aatattgcggagcacacactaccaggcgcaagatttcgtttagaatcagcacaggacccc
gacgttggctccaattctttacgcacatatacacttagtaaaaatgaacattttgtgcta
gatattaaaacaaataaagatgggtcaaaagtatccgaattgattttagaaaaggtattg
gacagagaaaaacagtccgtacacagcctgcttctaacagctgtagatggtggaaatcct
gctagatcaggcacagcggaaattattattcgggtacaagacataaacgataatgcaccc
atatttgaggaaagtggatatgatatccaagtggttgaaaatacacaaccaggaactatc
gttgtcactgtaaaagcagtcgatcgtgatgatggagtcaatcgtgagatcgtttactca
tttggtccacacacctcagagttgctacagaaccttttatctgttgatccccaaactggc
gaaataaaggttaagggagagatagattatgaagagagaaattcgtttaaaatggatgtt
cttgccacagacaaaggcattccaccaatgcaaggcctctgtactattcatattgaaatt
atggatttgaatgacaattccccagaaataattttaaagtctcagcctagccctgttcgt
gaagacgcgcctgttggaacagttgtagctttgataagtgccaaggacatagactctgga
gagaatggcaaggtctacttgaatatagcgccaggcttaccatttaaattgaaacattct
gtatctaacaactacgctttggttacggactccagtttggatagagaaacaaatccagag
tacactttcgaaattaaagcttctgactccggaacaccgtctctcaactccagaaaaaca
atcaatgttcgtattttggatgtcaatgacaaccctccagttttctcccagccctcttac
actgtttatgtcagagagaacaatgctgctggatcaataatgtgttcagtgtccgcttca
gatccagacataggagaaaatgccaagatatatttttctatattagactctaaagtgcaa
gacgtgtctgtctcctcctatatttacataaactcagacaacggcagcatctacagcatg
cattcgtttgactatgagaaactgaaggtgtttcagatccaggtacaggcaaaagaccac
ggctctccgtctctgaacagcaacgccacagttcatgtttttattctggaccagaacgac
aatgctcccgctgttatttacccatccgctgtcatgggctctgtctcccatcagaagatg
ccccggtccgctaaagcaggccacctcacaactaagatatcggcagtggacgcagactcg
ggccataacgcctggatttcctataggctagcggaggccacagactcgtctctgttcagt
gtgaatctttacacaggggaggtgaggactaaacgccctgtttcagagcaggatgactca
tctcagagtctgcttatagagataaaggacaatggggaaccggcccagtccaccacagtc
acagtcaacatactgttagaggacgggctccacgaacccatctcggatttccgccagaaa
acagcggagcccatcatgagaaacagtaaaatcaccttttatttgatcatctccctggcc
tcagtgtctgtgttgtctttgttgacttttctcattttagtggcgaagtgcgttagaaac
agtaggaatagctcgagttgctgtatcagacgggctgattctgacggatacaagaatccc
aacagaaacctgcagctccagctcaatactgacggccctattaagtatgtggaggtcctg
ggaggggacatgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtcagag
ttcagtgatttcaccctcgttaagcccagtagcaccactgacttgaaggagatgatcaac
gtgcttgatgcatcattacctgatagcgcgtggacgttcgagagccagcagcaaaaacca
cccaacaatgactggcgctttacccagcagggacaaagacctggacccagtggacagtac
acattggtgccccactactctacgcacagatccaataacactggcactactgaccggctg
aataatggcacgtacaggtacagcaccagcacccagcagagatggacaccgtacggcaag
gcgagagccggcccccatcctgagggggcaggtggtgccgtagttggaacaggaccctgg
cccaacccccccactgaggctgaacagctccaggctctgatggctgctgccaacgaggtg
agtgacgcgacagcaacccttggccctcgctacaatgcccagttccccatgcagcatgtg
cccgattaccgccagaacgtctacatccccggcagcacggccaccctgacggccaacccc
cagcagatgatgccccagcaggccttgcagggcccacctcaggtcataccccaggtggac
atccccaacgctggccagacccccgccagcaagaagaagtccaccaagaaggacaagaag
taa
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