Coregonus clupeaformis (lake whitefish): 121580008
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Entry
121580008 CDS
T08357
Symbol
rb1
Name
(RefSeq) retinoblastoma-associated protein
KO
K06618
retinoblastoma-associated protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04110
Cell cycle
cclu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121580008 (rb1)
04218 Cellular senescence
121580008 (rb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121580008 (rb1)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121580008 (rb1)
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121580008 (rb1)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
121580008 (rb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rb_C
RB_A
RB_B
DUF3452
YfeC-like
Motif
Other DBs
NCBI-GeneID:
121580008
NCBI-ProteinID:
XP_041751018
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All DBs
Position
13:27171613..27211921
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AA seq
912 aa
AA seq
DB search
MPPKKRNSGAAQNKEMKLSIKHASPENPDLTLSIEKHKEKDADFVTLCQSLQVTDAVCDR
AWTIWKAVQASVDKVPDTQKRLWGACLFVAVIDLEVASFTFTQIQKAVDLNVKQFLGLLK
KMDVNLDTISTKVNSAVTRLEKKYDVSRALYQRFEKTCSKIYAVDSEAKGKEILRSCWTM
FLLAKGRALQMEDDLVISFHLMVCVLEFFIRRCPPSLLQPLYQSAISTGQSPPTRTSRRN
QSKAKPRQAPQEVDVQLLETLCKENDCSVEEVKSVYQTSFSAFLDSMSLSGTWDLPQATD
LNKQYEELYFKSRDFDSRLFLDNDETLLTPKVEPMQVERTPRKNLPEEDVVLIPPQTPVR
AAMNSIAQLRVDLTSSGDQPSANLAVYFKNCTVDPTEEVLQRVESLGQLFSQRFGEAVGP
RCVGLGKQRFTLGIRLYYRVMESMLKSEEKRLSVQNFSKLLNDSTFHTSLLACALEVVMA
TYGGSTLKNGGYSNGGVPVETDLCFPWILDVFQLTAFDFYKVIESFIKAEPSLSKDIVKH
LERCEHLIMETIAWRADSPLFELLKRTREEGPVEQAEPPATLNQPLQHNHTAADLYLSPV
RPSSRPLPAAESTAPPSSQPPTPASHQTPRHPKSNSLSLFYKKLYRLAYMRLKMLYTQLL
TSHPELEPIMWTLFQHTLQNEYELMRDRHLDQLMMSAMYAICKVKNVDLRFKTIVTAYKN
MPNTNQETFKHVLIREGQYDSIIVFYNLVFMQKLKTNILQYASPRPPTLSPIPHIPRSPY
KFPNSPLRVPGSNNVYISPMKSPTRMSPGVMTPRTRILVSIGESFGTSDKFQKINAMVNS
SDRSLKRSLDMSSAPNPLKRLRFDVEGQDEADGSKPGEDSRLIQKLAEIGSTRTRMQEQK
MKDDAESKKDKP
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaaaaaacgcaactctggagcagcacagaacaaggaaatgaagctcagcatc
aaacacgcctccccggagaatccagatttaacgttatcgattgaaaagcacaaagagaag
gatgcagacttcgttactctgtgtcagagtctccaggtgacagatgcggtgtgtgatcgt
gcctggacaatatggaaggcagttcaggcctcagtggacaaagttcctgatactcaaaaa
aggctttggggcgcttgtctgtttgtggctgtgatagacttggaagttgcaagttttacc
tttactcaaatccagaaggcagtggatctgaatgtgaagcagttcctgggcctgctgaag
aagatggatgtgaacctggataccatcagcaccaaggtgaactcagcagtcacccgactg
gagaagaagtatgatgtgtcacgggcactctaccagaggtttgagaagacatgcagcaaa
atctatgccgtggattctgaagcaaaggggaaagaaatcctgcggagctgctggacaatg
ttccttttggctaagggaagggctctgcagatggaggatgacctggtcatatccttccat
ctgatggtgtgtgttttggagttcttcatcaggcgttgcccgcccagccttctgcagcca
ctttaccaatcggccatcagcacaggccagagccccccaacaagaacctcccgtcgcaat
cagagcaaagccaagccccgtcaagcccctcaagaggtggacgtgcagctcctggagacc
ctctgcaaagagaacgactgcagcgtggaagaggtgaagagtgtgtaccagaccagtttc
tctgctttcctggactccatgagcctctctgggacttgggaccttcctcaggcgactgac
ctcaacaagcagtatgaggaactctacttcaagagtagagactttgacagtaggctgttc
ttggataatgatgagacacttctcactcccaaagtagaaccaatgcaggtggaaaggaca
ccaaggaagaacctgcctgaagaggatgttgttctcatccccccacagacgcctgtcaga
gctgccatgaactccatcgcacagttgagggttgatctcacctcctctggcgaccagccc
tctgccaacctggcagtgtatttcaagaactgcacagtggacccaacagaggaggtgttg
cagcgtgtggagagtctgggtcagctgttcagccagaggtttggtgaggctgtcggacca
cgctgtgtggggctgggcaaacagaggttcacccttggtatccggttgtattacagagtc
atggagtccatgctgaaatcggaagagaaaaggctttcggtgcagaatttcagtaaactc
ctcaatgactccacattccacacatcgctcctggcctgcgctttggaggtcgtcatggca
acctatggtgggagcaccttaaagaacggtggctacagcaacggtggtgttcccgtggag
acggacctgtgcttcccatggatcctggacgtgttccagctgacagcatttgacttctac
aaggtgatcgaaagcttcatcaaggcagagcccagcctgagcaaagacatcgtcaagcac
ctggagcgctgcgaacacctcatcatggagaccatcgcctggagggcggactctccgctg
tttgagctgctgaaacggacccgtgaggagggtccagtggagcaggctgagccccctgcc
accctcaaccagcccctacagcacaaccacactgcagctgacctgtatctttctcctgtg
cgccccagtagccgtcccctgccggccgctgaatctacagccccaccctcctctcagccc
cctaccccggcgtcccatcagacccctaggcaccccaagtccaactctctcagcctcttc
tacaaaaaactgtaccggctggcctacatgaggctgaagatgctgtacacacaactgttg
acctctcaccctgagctggagccaatcatgtggactctgttccagcacacactgcagaat
gagtacgaactgatgagagaccgccacctggaccagttgatgatgtcggccatgtacgcc
atatgcaaggtgaagaacgtggacttgcgtttcaagaccatcgtcactgcttacaagaac
atgcccaacaccaaccaagagacatttaagcacgtgttaatccgggagggccagtatgac
tccatcatcgtcttctacaacctggtgttcatgcagaaactgaagaccaacatcctgcag
tacgcctctcccaggccccccacactgtctcccatcccacacatcccccgcagcccctac
aagttccccaactcccccctgagagtgcctggtagcaacaacgtctatatctctcccatg
aagagcccaacgcgcatgtctccaggggtcatgaccccacgtaccagaatcctggtatcg
atcggtgaatcgtttgggacctctgataagttccagaagatcaatgcgatggtgaacagc
agtgataggtccttgaagaggagtttggatatgagctccgcccccaatcccctgaagagg
ttgcgctttgacgtagaaggacaggacgaagctgacgggagcaaacctggggaagattcc
agactgatacagaaacttgcagagataggctccactcggacccgcatgcaggaacagaag
atgaaggatgatgcagagtccaaaaaggacaagccttga
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