Coregonus clupeaformis (lake whitefish): 121581843
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Entry
121581843 CDS
T08357
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121581843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121581843
Membrane trafficking [BR:
cclu04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
121581843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
TrAA12
Motif
Other DBs
NCBI-GeneID:
121581843
NCBI-ProteinID:
XP_045076078
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MIGAPDVVAFTKEDDFGEVGYPDPWVVPEEFSVPLFPSNNNANPWAKTSYAKFTKDFILI
SEFSEQVGPQPLLTIPDDPKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSGYPRLSFVED
SRVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSADERKIMGQFQEMSLRFSRAS
ESLKTGNRRAFARELQRKLRDLEYTRSILQKEEGLQREAGPQGCYSAHAVEKANELAAVE
KSIYEHRDLLRQITSYPLRPRRDPHAAHCQHCITESQRHTDTHPGPDRERGEEEEEEEGG
TRRQSYTPQLIKGKSAKCFDKRLKTLTELCEESSYEVTVELLADTERCFRGDLCYLYTRR
LDRSLRRKQDITNFLFEEELGEEEEEVAALGRIFCSLNHTMGTDPHTHSHTHTHTPSVVL
RPEPLEPVEVLEVYPTFPAKSAQQSETLAGEERLESSLSDLTMETQESSEENKDSFSSDR
SGGEEEEGREGGQEEEEEEGDQTPVFLLEAEEGGKGETEGVFNGEREGETEGVFNGEREG
ETEGVFNGEGEGETEEGDRQRLPDPELLVQMDTACCMSQEGFLYDSSPQDTLPASGLQQP
GSLPFPLVVNQEPQALLPVQGAYGLGSPHCQSPGAGLDLPVSSLGDTTSRGSDQDGSDCT
MSASTGSERAGSRLGYGGVATQRKKAGQGAL
NT seq
2075 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgccccagacgtggtggcgtttactaaagaggatgattttggggaggtcggg
taccccgacccctgggtggtgccagaagagttctctgtccctctgttcccatcgaacaac
aacgccaacccctgggccaagacatcatatgccaagttcactaaggatttcatcctcata
tcagagttctctgagcaggtgggcccccagcctctactcaccattcccgatgaccctaag
gtgtttgggacctttgacctcaactacttcagtctgaggattatgtctgttgactaccag
gcctcgttcgtaggacacccccccggcagcggatacccacgactcagtttcgtggaggac
tctcgtgtggttctgggtgactctaaggagggggcgttcgcctacgtccaccacctgacg
ctgtacgacctggaggctcgcggcttcgtccgcccgttctgcatggcctacgtctctgcc
gacgagaggaagatcatgggccagttccaggagatgtcgctccgcttctcccgcgcctcc
gagagcctgaagaccggaaaccgccgggccttcgcccgcgagctgcagaggaagctacga
gacctggagtacacgcggtccattctgcagaaagaggaggggttacagcgggaggcgggg
cctcaggggtgttactccgcccacgcggtggagaaggccaatgagcttgcggcggtggag
aagagtatctacgagcaccgagacctgctgaggcagatcacctcgtacccgctccgccca
cgccgagacccccacgccgcacactgtcaacactgcatcacagagtcacagagacacacc
gacacacaccccgggcctgaccgtgagaggggggaggaggaggaggaggaggaggggggg
acgaggagacagtcctacacccctcagctgataaaggggaagtcggccaaatgtttcgac
aagcgtctgaagaccctgacggagctgtgtgaggagagctcctacgaggtcaccgtggaa
ctactcgccgacacggagaggtgtttccggggggacctgtgttacctgtacacccgccgc
ctggaccgatcgctccgcaggaagcaggacatcaccaacttcctgtttgaggaggagcta
ggggaggaggaggaggaggtagcggcgctgggaaggatcttctgttctctcaaccacaca
atggggacggacccgcacacacactcacacacacacacacacaccccttccgtcgtgctg
cgcccggagcccctggagcctgtggaggtcctggaggtgtaccccaccttccctgctaag
tctgcccagcagagtgaaaccctggctggggaggagaggctggagtcgtcactctctgat
ctgaccatggagacacaggaaagctctgaggagaataaagacagctttagtagtgacagg
agtggaggagaggaggaggagggacgggagggaggacaggaggaggaggaggaggaggga
gaccagacccctgtttttctgctggaggctgaggaggggggtaagggtgagacggaaggc
gtgtttaacggagagagagagggtgagacggaaggcgtgtttaacggagagagagaggga
gagacagaaggagtgtttaacggagagggagagggagagacagaggagggtgatagacag
agacttcctgaccctgagttgctggtccagatggacacggcctgctgcatgtctcaggag
ggcttcctgtacgactcctctccccaagacacgctgcctgcttctgggctgcagcagccc
ggctctctaccctttcccctggtggtcaaccaggagccccaggccctgctgccggtgcag
ggggcctacggcctgggttccccccactgccagagccctggggctgggctggacctgccc
gtctcctccctgggagataccacctccaggggttcggaccaggacgggtcggactgtacc
atgtcagcctctacggggtccgaacgggccggctcacgtctggggtacgggggagtggcg
acgcagaggaagaaggccgggcagggagcgctcaa
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