Coregonus clupeaformis (lake whitefish): 121581968
Help
Entry
121581968 CDS
T08357
Symbol
hmgcs1
Name
(RefSeq) hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1
KO
K01641
hydroxymethylglutaryl-CoA synthase [EC:
2.3.3.10
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00280
Valine, leucine and isoleucine degradation
cclu00650
Butanoate metabolism
cclu00900
Terpenoid backbone biosynthesis
cclu01100
Metabolic pathways
cclu03320
PPAR signaling pathway
Module
cclu_M00095
C5 isoprenoid biosynthesis, mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
121581968 (hmgcs1)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
121581968 (hmgcs1)
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
121581968 (hmgcs1)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121581968 (hmgcs1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.3 Acyl groups converted into alkyl groups on transfer
2.3.3.10 hydroxymethylglutaryl-CoA synthase
121581968 (hmgcs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_CoA_synt_C
HMG_CoA_synt_N
PS_Dcarbxylase
ACP_syn_III
Lectin_C_term
Motif
Other DBs
NCBI-GeneID:
121581968
NCBI-ProteinID:
XP_041753350
LinkDB
All DBs
Position
15:complement(14551955..14561566)
Genome browser
AA seq
536 aa
AA seq
DB search
MYSALGKRGVVHSSYRMPGSAPANGEATWPKDVGVIALEIYFPSQYVDQAELEQFDGVSA
GKYTVGLGQARMGFCSDREDINSLCLTVVQRLMQRNGLSYDQVGRLEVGTETIIDKSKSV
KTVVMQLFEESGNADVEGIDTTNACYGGTAALFNAVNWVESSSWDGRYALVVAGDIAVYA
TGSARPTGGAGAIAMLVGPNAPLAFDRGVRGTHMQHAYDFYKPDMASEYPVVDGKLSIEC
YLSALDRCYSVYRNKIHAQWQREGVDKRFSLEDFGYMVFHSPYCKLVQKSLARLVLNDFL
SHPSPNTETGPFSGLEAFREVKPEETYFNRDVEKAFMKASTEMFDQKTKASLLVSNQNGN
MYTPSVYGCLASVIAQHTPQHLAGQRIGLFSYGSGFAATLYSLRVSQDATPGSGLDKLCA
SLCDLKARLDSRRKVSPAMFADNMQLREDTHHLAPYVPQGSVEELFPGTWYLTRVDEKHR
REYARRSLNDDLPLEAGLVNSTTATEQHIPSPVKKMPRLPASTAGPEAVTVSNGDH
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtattcggcacttggaaaacggggtgtcgttcacagctcatacagaatgcctggatca
gccccagccaacggcgaggccacgtggcccaaagatgtgggtgtcatcgccctggagatc
tacttcccctcacagtacgtggaccaggccgagctggagcagtttgacggcgtgtccgct
ggtaaatacacggtgggcctgggccaggcgcgaatgggcttctgctcggaccgcgaggac
atcaactccctctgcctgacggtggtccagcggctgatgcaaaggaatggcctctcctac
gaccaggtgggccgtctggaggtgggcacggagaccatcatcgacaagtccaagtcggtg
aagacggttgtgatgcagcttttcgaggagtcgggcaacgcggacgtggaggggattgac
acgaccaacgcttgctatgggggcaccgccgccctcttcaacgccgtcaactgggtggag
tccagctcctgggacggtcgttatgccctggtggtggcaggagacattgcagtttatgcc
acaggaagtgcccggccaacagggggcgccggtgcgatagccatgttggtagggcccaac
gccccactggcttttgacagaggtgtgaggggtacacacatgcagcacgcctacgacttc
tacaagccagatatggcgtcagagtatcctgtggtggacggaaagctctctatcgagtgc
tacctcagcgcgttagatcgctgttactctgtctatcgcaacaagatccacgcacagtgg
caaagagagggtgtggacaagcgtttcagcctggaggactttggctacatggtgttccac
tctccctactgcaagctggtgcagaagtccttagcccgtctggtgctcaacgacttcctc
agccaccccagccccaacacagagactggaccattcagtggcctggaggctttcagggag
gtgaagccggaggagacctacttcaacagggatgtggagaaggccttcatgaaggccagc
acggagatgtttgaccagaagaccaaggcctccctcctcgtctccaaccagaacggcaac
atgtacaccccctccgtctacggctgccttgcttctgttatcgcacaacacacacctcag
cacctggcaggccagagaatcggcctgttctcctacggctcagggtttgccgccacactc
tactccctccgagtctcccaggacgccacgcctggctctggattggataagctctgtgcc
agcctgtgtgacctcaaggccagactggactctaggaggaaggtgtcacctgccatgttc
gcagacaacatgcagctgagggaagatactcaccacctagcaccttacgtgccccagggt
tctgtggaggagctgttccctgggacgtggtacctgacccgggtggacgagaagcaccgc
cgggagtacgccagacgctccctgaatgacgacctgcccctggaggctggcctggtcaac
tccaccacagccactgagcagcacatcccaagcccagtgaagaagatgccccgccttccc
gcctccacagctggtcccgaggcggtcaccgttagcaacggggatcattaa
DBGET
integrated database retrieval system
