Coregonus clupeaformis (lake whitefish): 121582376
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Entry
121582376 CDS
T08357
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121582376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121582376
04121 Ubiquitin system [BR:
cclu04121
]
121582376
03036 Chromosome and associated proteins [BR:
cclu03036
]
121582376
Enzymes [BR:
cclu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121582376
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121582376
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
121582376
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121582376
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121582376
BRITE hierarchy
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
121582376
NCBI-ProteinID:
XP_041754049
LinkDB
All DBs
Position
15:complement(43916268..43957698)
Genome browser
AA seq
1401 aa
AA seq
DB search
MEAGTESGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKARDGLGIRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEKERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLKLKRRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQNDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVNSKFRYPFYHEMCWYVLERYVHCLTKRSHLTPEFRREPLLI
DLETKMSTESPSSDSRSQDMDEEDSCETQQGRGEQGDRSAFDDPCSPDNRKGNPSGPQHL
KAALSNDSEDSCIPTSTQPPEFPKTPFASPVSESPSKWTHLTEFELKGLKALVEKLEALP
ENKKCVPDGIKDPQALLDDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKQQRPPNRPKP
KMAATSPAAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQ
SCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNRMLMECSICNEIVHPLCLKVKD
SGGVVNDELPNCWECPKCNHSGKTGKAVKQKRGPGFKYASNLPGSLLKDSRFNRDIKEEP
EPPSVPTSPTLTMATVTTVKRKAERDDTPKRKAEESPPLKKRSPMLSLGGLPRPRLEDNP
LRKKRMLFDIKDEDEPPVVKKKKKPPKPDDLLIPKLLKPIKQERVDGDEEHKAHEDEAED
RYTGDRVTTKGKRQEEDGDKEEEEEKDGGGEDCKDGTVKTMLSPLLRTSAARESDQSCSS
SPRAGPSSEGCDAPEKTPGQLKARKRRRLPNKELSKELSKELNLEIQKTEDCLANQNRRP
LKREDSPANNSRRPLKTEDSSTNPNRRPLKTEDSPGNHNRRPIKTEDGLSNHNRRPLKTE
DSLVNPNHRPMKTEPESDGEEPKPKRPLNNCSSDLGDWLHPRGREVNGTPRQLSPLGWNR
SPPITAICPRPPPCRSPPKCVQMERHVIRPPPISPPPDRLPLDDGQIHVMRREVWLAVFG
HLAHRDLCVCMRVCKTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVSLDLSWTN
ISKKQLSWLINRLPGLRMLLLSGCSWAAVSVLCTASCPLLRTLDVQWVEGLKDAQMRDLL
SPPTDNRPGQLDNRSKLRNVVDLRLAGLDITDTSLHLLICYMPQLTRLDLSYCNHVTDQS
VNILTAAGSTTRDSLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCERFI
AEMSVSVQFGLVEEKLLQKLC
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgggtacagaatctggacgcaaactgcgctccatctgccggacaatgtacgac
gaaaatgaggacttctctgacgttgaagaaattgctaatgtcaggggtttcaatctggag
gagaaacttgttagcgactcatacaacacacatttcgttcagttgatggacggcaaagat
ttcacttatgagtatgtccagagagaggcacttcagacccctcttattttcaaagccaga
gatggactagggatcagaatgccagacccggagttcaccgtcagtgagattaaaggtttg
gttggtagccgtcgtgccgttgatgtgatggatgtgagcactcagaaaggctctgagatg
agcatggcccagtttgtccgctactacgagacgcctgagaaagagcgggacaaactcttc
aatgttatcagtctagagttcagtcacaccaaactggagaacctcatcaagaggcccact
gtggtggatttagtggactgggtggacaacatgtggcccctaaaactaaaacgaagacaa
actgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccatattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggagggaaggtgttctggctggtgcctccgacgcctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagaatgacatcttcctgggagaccgt
gcagatggctgccagagggtggagctgaaacagggctacaccttcttcatcccctctggc
tggattcatgcagtctacacccctgaggacacgctggtgttcggcggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaacaggactaaggttaat
tccaagttccgctacccattctaccatgagatgtgctggtatgtcctggagaggtacgtg
cactgtctgaccaagcgttcccatctcactccggagttccgtagagagcctctgctaatc
gacttggagactaagatgagcacagagagcccctcctctgactcccggagtcaggacatg
gacgaggaggactcctgcgagacgcagcagggacgaggtgaacagggtgaccggtctgca
tttgatgatccctgctctcctgataacaggaagggtaatcccagcggccctcagcacctc
aaagctgccttgtccaatgactctgaagacagctgcatccccacctccacccagcctcca
gagttccccaaaaccccctttgcctcgccagtctcagagtctccgagtaaatggactcat
ctgactgagtttgaactaaagggcctcaaggcccttgtggagaaactggaagcactcccc
gaaaataagaagtgtgttccagatggcatcaaggacccccaggccctgctggatgacatg
aaggttgtcttgaaggaacatgaagacgatgatcccaaaatggctgctactggagtacct
gtggtgttctggcccaagaagtctgccaagcagcagcggcctcccaacagacccaaaccc
aaaatggcggccacatctcccgcggcggcggtcaagctgtcggccagccggagcacgtct
ggcgcccggaggaggaggacgcgttgtcggaagtgcgaggcgtgcctgaggacagagtgt
ggagagtgccacttctgtaaagacatgaagaagtttggagggccaggtcgcatgaaacag
tcctgcatcatgaggcagtgtatagcgcctgtcctgccccacacagcagtgtgtctggtg
tgtggagaggcagggaaggaggacacagtggaggaagaggaggacaagtttaaccgcatg
ctcatggagtgctccatctgcaatgagatagtccatcctctctgcctcaaggtgaaagat
tccggtggagttgtaaatgacgagttgccaaactgctgggagtgtccaaaatgcaaccat
tcagggaagacagggaaagccgtcaagcaaaaaagaggaccagggttcaagtacgcgtcc
aaccttcccgggtcgctactgaaggactcacgatttaaccgtgacatcaaggaagagccc
gagcctcccagtgtgccaacctcacccactttgaccatggcaaccgtgaccacagtgaaa
aggaaggcggagcgtgatgacacccccaaaaggaaagcagaggaatctcctcctctgaag
aaacgttctcccatgctgtctctgggcgggctaccccgacccaggcttgaggacaaccct
ctgaggaagaagaggatgctgttcgacatcaaagatgaggatgagcctcctgttgtcaag
aaaaagaagaagcccccaaaacctgatgaccttttgatccccaaactgttaaagcccatc
aagcaagagcgagtggatggggacgaagaacacaaagcccatgaagatgaagcggaggat
agatacacaggggacagggttacaactaaagggaaaagacaagaagaggatggagataag
gaggaggaggaggagaaagatggtggtggagaggactgtaaagacggtacagtaaagact
atgctgagtccactgctacggacgtctgcagccagagagagtgaccagtcctgctccagc
tctccccgggcagggcccagcagtgaagggtgcgatgccccagagaagacacctggccag
ctgaaggcacgcaagcgccgccgcctccccaacaaagagctgagcaaggagctgagcaaa
gagctcaacctggagatccagaagaccgaggactgcctggccaatcagaaccgcagacca
ctgaagagggaggacagcccagccaataacagccgtcgacccttgaaaactgaggactcc
tcgaccaatccgaaccgcagaccactaaaaacagaggactccccgggcaatcataaccgc
aggccaattaagactgaggatggcctatccaatcacaaccgccgcccattgaagactgag
gacagcttagtcaatccgaaccacaggccaatgaagacagagcctgagagcgacggggag
gagcctaagccgaagcggccactcaacaactgcagcagtgacctcggagactggctccac
cccagggggcgggaggtgaacgggacgccccgccagctctcgccccttgggtggaaccgc
agccctccgatcacggccatttgcccacgcccccctccctgccgctcaccgcccaagtgt
gtccagatggagcgtcacgtgatccggccgcctcccatcagccccccgccagacagactg
cccctggacgacggacagatccacgtgatgcgcagggaggtgtggctggccgtgttcgga
cacctcgcacacagagacctttgtgtctgcatgcgcgtctgcaagacctggaacagatgg
tgctgtgataagaggctgtggacgcggatcgatctgaaccgctgcaagtccatcactccc
ctcatgctgagtggcatcatccgcagacagcctgtgtcgctggacctcagctggaccaac
atctccaagaagcagctcagctggctcatcaacaggctgccaggtctgcgcatgctgctg
ctctcaggctgctcctgggcggctgtgtctgtcctctgcactgccagctgcccgctgctg
aggaccctggacgtccagtgggtagaggggctcaaagacgcccagatgagggacctgctc
tcacccccaacagacaacagaccaggtcagctggacaacaggagtaagctgcggaacgtg
gtggacctgcgtctggccgggctggacatcaccgacacctccctgcacctcctcatctgc
tacatgccccagctgaccagactggacttgagctactgcaaccacgtcactgaccagtcg
gtcaacatcctgactgctgcagggagcaccaccagagactcactcactgacatcaacctc
tccgtgtgcaacagagtcacggaccagtcgttgacatacttcaagcgctgtggaagcatc
tgtcatattgatttgcgctactgcaagcaggtgaccaaggagggctgtgagcggttcatt
gctgagatgtcagtgagtgtacaatttggactagtagaggagaaactactacagaaactc
tgctag
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integrated database retrieval system
