Coregonus clupeaformis (lake whitefish): 121582622
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Entry
121582622 CDS
T08357
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
cclu04210
Apoptosis
cclu04217
Necroptosis
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04920
Adipocytokine signaling pathway
cclu05132
Salmonella infection
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121582622
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121582622
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121582622
09143 Cell growth and death
04210 Apoptosis
121582622
04217 Necroptosis
121582622
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121582622
04622 RIG-I-like receptor signaling pathway
121582622
09152 Endocrine system
04920 Adipocytokine signaling pathway
121582622
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121582622
09171 Infectious disease: bacterial
05132 Salmonella infection
121582622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121582622
04121 Ubiquitin system [BR:
cclu04121
]
121582622
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121582622
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121582622
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121582622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
zf-C3HC4_2
TRAF3_RING
zf-C3HC4_4
Sina_ZnF
SlyX
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121582622
NCBI-ProteinID:
XP_041754490
LinkDB
All DBs
Position
15:complement(30103174..30115579)
Genome browser
AA seq
595 aa
AA seq
DB search
MATQEPSPPSSMESNKPGFPKQILANKLEDKHLCNCCQNLLRRPFQAQCGHRFCSYCFNR
TVRDGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVENLSAVCINEGCTWKGNIKE
YELSHEGKCEYMIIPCPSCKEQIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKERIHDHERACA
YEHLNLLLHYIMDMKVSMEGLQPQGLELAGHKLLELHHSLRELEARISQLSTTSTRPPVQ
GATSSSSSSGLPGPPALALPLPPPPALAPTLSVSTSFTPLPSSVGAALELQLHSEKTKVA
ELGRRCTDLEVKAGMFENVVCVLNREVERFATTMEASNRQHRLDQDKIEALSNKVRQLER
TVGLKDLTVAEMEGRLREISATTFDGVFVWRISDFTKKRQDAIAGRAPAMFSPAFYTSKY
GYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHIIDA
FRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcaagaaccatcccctccgtcgtccatggagagcaacaaacccggcttcccc
aagcagatcctggccaacaagctggaggataaacacctgtgtaactgctgtcagaacctg
ctgcggaggcccttccaagcccagtgtggacaccgcttctgttcctactgcttcaatagg
actgtcagagatggacctcagaaatgcaatgcttgtatcaaagaggacatttttgaagag
cccacgtcgattctaaaacaaggctgtgcttttcctgacaacgcagctcgaagagaggtc
gaaaacctctccgctgtctgcatcaacgaaggctgcacttggaaaggcaatattaaagaa
tatgagttgagtcacgaggggaagtgtgagtacatgatcatcccctgcccctcctgtaaa
gagcagatccgcttcaacgaacaggaacgccacaacgagcgagagtgccccgagagaact
ctcaactgcaagtactgcaaggaaccattccatttcaaaaacatcaaggcccacgacgag
atctgccccaaataccccatgatctgtgaaggctgtgccaagaagaaaatacccagggag
aagtatgtggaccacattaagttctgcagcaaattcagaactccatgcagattccatgtt
gttgggtgtgatatgtcagtggagaaggagaggatccatgaccacgagagggcctgcgcc
tacgagcacctcaacctgctgctgcactacattatggacatgaaggtgagcatggagggc
ctgcagccgcaaggcctggagctggctggacacaagctcctggagctccaccattccctc
agggagctggaggctcgcatctcccagctcagcactacctctacccggcctcccgtgcag
ggggccacctcctcttcttcctcctcgggcctccccgggcctcccgccctggctcttccc
ctgcctccacctcccgccctggcccccaccctgagcgtgtccacctccttcacccccctg
cccagctcggtgggggcggccctggagctgcagctccacagtgagaagacaaaggtggcg
gagctgggacgcaggtgcaccgatttggaggtgaaggcggggatgtttgagaatgtggtt
tgtgtgttgaacagagaggtggagcgctttgccaccaccatggaggccagtaacagacag
caccgcctagaccaggataagattgaggccctgagcaacaaggtgcggcagctggagagg
acggtggggctgaaggacctgacggtagcagagatggagggcaggctgagggagatatcg
gccaccacattcgacggcgtcttcgtctggaggatctctgactttaccaagaagagacag
gatgccatcgctggccgagctcctgccatgttctcaccagccttctacaccagtaaatac
ggctataagatgtgtctgcggatctacctgaacggggacgggacagggcgtggcagtcac
ctgtctctgttctttgtcgtgatgaggggactgagtgatgctctgctcaaatggcccttc
aaccagaaggtgactctgatgctgctggaccagagtaacagggagcacatcatcgatgcc
ttccggcccgacgtcacttcctcctctttccagaggcctgtaagtgagatgaacatcgcc
agcggctgcccgctcttctgcccactctccaagctcgacgccaagaactcctacatccgc
gacgacaccattttcatcaaggccatcgtggatctcacaggcctctag
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