KEGG   Coregonus clupeaformis (lake whitefish): 121584765
Entry
121584765         CDS       T08357                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121584765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121584765
   04121 Ubiquitin system [BR:cclu04121]
    121584765
   03036 Chromosome and associated proteins [BR:cclu03036]
    121584765
Enzymes [BR:cclu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     121584765
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    121584765
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     121584765
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    121584765
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     121584765
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box PHD Viral_cys_rich LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 121584765
NCBI-ProteinID: XP_041756797
LinkDB
Position
16:39714988..39732369
AA seq 781 aa
MALSLSADEEDYDSESEQQREANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLEEDKFN
VMLMECSICNEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGFKY
ASNLPGSLLKEQKTVKEEGESTSTSTSTAKRKPEGDETPRHRPEEREPLHRHPPVLTPST
LPRPRPEDKLRKKRKLFDDDEEEDFSVRKKGKSDETLFPKLLHQIKTEEEEVDEKEKDSL
FWRGLERRVRLGDTEDEAEDRDDEDTKTNLPRPPLKTPVLDSDQSHCSSPQAGPSSEGGS
EPQEKGPRPKARRKRRLPNKELSKELSKALNQEIQKTENCLANENRQPLKVEPESENEEP
KRGFRIGSDLGGERPHLRTKEMNGTPWELRHFYPSQITPLGFNRSSPGTRPLPPRSPPKC
VQMERHVIRPPPISPPPDRLPLVDGKTHAVQREIWMKIFGHFTHKELCVCMCVCKTWNRW
CCDKRLWTNIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLGWLINRLPGLRVLL
LSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNV
LDLCLAGLDITDTSLRLIIRHMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINL
SVCNRVTDHSLTFFKRCGTICHIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQKL
S
NT seq 2346 nt   +upstreamnt  +downstreamnt
atggccttgtcactgagtgcagacgaagaggattatgattcagaatctgaacagcaacgg
gaagccaaccggccaaagcccaaaatggggacttcagcagcggtcaagctgccatccaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaaccgagtgtggagaatgtcacttctgtaaagacatgaagaagtttggaggaccaggg
cgcatgaagcaatcctgtatcatgaggcagtgcattgcacccgtcctgccccacacagct
gtgtgtgtggtgtgcggagaagcagggaaggaggacacattggaggaggacaagttcaat
gtcatgctcatggagtgctccatctgcaatgagattgtccaccccaactgcttaaaggta
aaagatgcctctggcgtggtgaacgatgaacttcctaactgttgggaatgtcccaaatgc
aactatgctgggaaaaccggaaaagtctgcaagcaaaaaaggggaccaggattcaagtat
gcgtctaacctccctggctccctgctgaaggagcagaagacagtcaaggaggagggcgag
tccacatccacctctacgtctacagccaagaggaagcctgaaggggatgagacccccaga
cacagacctgaggaacgggagcccctccacagacacccccctgtcctgacccccagcacc
ctgcctcggcccagacctgaggacaaactgaggaagaagaggaagctcttcgacgatgat
gaggaagaggacttcagtgtgaggaagaagggaaagtcagatgaaactctgttccccaaa
ctccttcatcagatcaagactgaggaggaggaagtggatgagaaggagaaggactctctg
ttctggcgaggcctggagaggagagtgcgtttaggagataccgaggacgaggcagaggac
agggatgacgaggacacaaagacaaacctgccaaggcctcctctcaaaactcctgttcta
gacagtgaccagtctcactgcagctctccacaggctggccccagcagcgaggggggcagt
gaaccccaggagaagggcccacgccccaaagcacgccgcaaacgccgtttacccaacaag
gagctgagcaaagagctgagcaaagcactgaaccaggagatccagaagactgagaactgc
ctagccaatgagaaccgccagcccctcaaggtggagccagagagtgagaatgaggagccc
aagaggggcttccgcatcggcagtgacctgggaggggagcgcccccacctccggaccaag
gaaatgaacggcaccccctgggagctgcgccacttctaccccagccagatcacccctctg
ggcttcaacaggagctcccctggtacccggcccctgcccccacgctccccacccaagtgt
gtccaaatggagcgtcacgtcatccggccaccccccatcagccccccgccggacagactg
cccctggtggatgggaagacccatgcggtgcagagagagatctggatgaagatctttgga
cacttcacacacaaggagctgtgtgtctgcatgtgtgtctgcaagacatggaatagatgg
tgctgtgataaaagactgtggaccaacattgatctgaaccgctgtaaatctatcactccc
ctcatgctgagtggcatcatccgcagacagcccctctcactggacctcagctggaccaac
atctccaagaagcagctgggctggctaattaaccgcttaccaggtctgcgggtgttgctg
ctctcagggtgctcgtgggtggctgtatctgccctctgcacctctagctgccctctgctg
cgcaccctggacgtgcagtgggtggaggggctcaaagatgcccagatgagggacctgctc
tcgccaccgaccgacaacagaccaggtcagttggacaaccgctgtaagctgaggaacgtt
ttggacttgtgtctggccggactggacatcacagacacctctctgcgtctgattatcaga
catatgccgttactttcccgactggacctgagctattgcaaccacatcaacgaccagtcg
gtcaacctgctgacggccgcagggacaacaaccagagattccctcacagagatcaacctg
tcagtttgtaatagggtgacagaccattcccttaccttcttcaagcgctgtggaaccatc
tgtcacattgacctgcgctattgcaaacaggtgaccaagactgcctgtgaacagttcata
gcagagatgtctgtgagtgtacagtttggactcaaagaggacaaattactgcagaaactc
agctag

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