Coregonus clupeaformis (lake whitefish): 121585058
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Entry
121585058 CDS
T08357
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
cclu04210
Apoptosis
cclu04217
Necroptosis
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04920
Adipocytokine signaling pathway
cclu05132
Salmonella infection
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121585058
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121585058
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121585058
09143 Cell growth and death
04210 Apoptosis
121585058
04217 Necroptosis
121585058
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121585058
04622 RIG-I-like receptor signaling pathway
121585058
09152 Endocrine system
04920 Adipocytokine signaling pathway
121585058
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121585058
09171 Infectious disease: bacterial
05132 Salmonella infection
121585058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121585058
04121 Ubiquitin system [BR:
cclu04121
]
121585058
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121585058
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121585058
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121585058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_4
zf-C3HC4_2
Sina_ZnF
zf-RING_5
ATG16
Zn_ribbon_ACC
MATH
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121585058
NCBI-ProteinID:
XP_041757334
LinkDB
All DBs
Position
16:49990866..50005065
Genome browser
AA seq
576 aa
AA seq
DB search
MAAQEPSPPSSLEGNKPGFPKKILANNLEEKHLCNYCLKILRRPLQAQCGHRFCLFCFNK
IVSSGQQKCSACIKEDLFEDPTSILKEGGAFPDNAARREVEALAAVCTNEGCTWTGNIKE
YEVNHEGKCDFMIILCPSCKELMRTNELERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRAPCRFHVVGCDMSVEKEKTHDHERACS
YEHLNLLLHFIMGIKVSLESLQPQSLELAGHKIHELHRALRELELKLGQLTLGGGAPVQG
GCTPTLPTLALPALATSFTPLPSTVGAALELQLHSEKTKVAELSRRCQELELKVGTFENI
VCVLNREMERSSTTIEAYNRQHRLDQDKVEILNNKVRQLERTVGLRDLSIVEMEGNMREM
SAATFDGIFVWKISDFTKKRQDAVAGRAPAMFSPAFFTSKYGYKMCLRIYLNGDGTGRGS
HLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQRPVSDMNI
ASGCPLFCPLPKLDTKNSYIRDDTIFIKAIVDLTGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaagagccatcaccaccatcttcactggaaggcaacaaaccagggttccct
aagaaaattttggcgaacaacctcgaagaaaaacacttgtgtaattattgtttgaaaata
ttgagaaggcctctacaagcccaatgtggccatcgtttttgtttgttctgtttcaacaaa
attgttagttctggacaacagaaatgcagtgcttgcatcaaagaggacttgtttgaggac
cccacatctattcttaaagaaggcggtgcttttcctgacaatgcagcgcggagagaagtg
gaagcattggcagctgtttgtacaaatgaagggtgcacttggacgggcaatatcaaagaa
tatgaggtgaaccatgagggaaagtgtgacttcatgataattctctgtccctcctgtaaa
gaactcatgagaaccaatgagctggagcgccacaatgaacgagaatgtcctgagaggact
ctaaactgcaaatactgcaaagaacctttccatttcaagaacatcaaggctcacgatgag
atctgtccaaagtacccaatgatttgtgaaggctgcgcaaagaaaaagattcccagggaa
aagtatgtggaccacatcaagttctgcagtaaattcagagcaccttgcagatttcacgtc
gttggctgtgatatgtctgtggagaaggagaagacccatgaccatgagcgtgcatgttcc
tacgaacacttaaatctactcttgcatttcatcatgggcatcaaggtgagcctggagagc
ttgcagccccagagcctggagctcgcaggtcacaagatccacgagctgcaccgggccttg
agagagctggagctgaagctgggacagctgactctgggtgggggagcccccgtgcaggga
ggctgtacccctaccctccctaccctggccctccctgccctggccacatccttcaccccc
ctgcccagtacggtgggcgcggccctggagttgcagctccacagtgagaagaccaaggtg
gcagagctgagccggcggtgccaggaactggagctgaaagtgggcaccttcgagaacatt
gtctgcgtcctcaaccgagagatggagcgctcctccaccaccatcgaggcctacaaccgc
cagcatcgcctggaccaggacaaggtggagatcctcaataacaaggtgcgtcagctggag
agaactgtgggcctgagagacctgtccattgtggagatggaggggaatatgcgggagatg
tcggcagctacgtttgatggcatctttgtctggaaaatctctgatttcacaaagaaaaga
caggacgctgttgctggcagagccccagctatgttctcccccgcatttttcaccagcaaa
tatggctacaagatgtgtctacggatttatctgaatggggacgggaccggacggggcagt
cacttgtctctgttcttcgtagtgatgagggggcacagtgacgccctcctcaagtggccc
ttcaaccagaaggtgaccctgatgctgctggatcagaataaccgagagcacatcatcgat
gccttccgtcccgacatctcctcctcctccttccagaggcccgtcagtgacatgaacatc
gccagcggctgcccgctcttttgccctcttcccaaactggacaccaaaaactcctacata
cgagatgatactatattcatcaaggctatagtagacctcactggcctctag
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