Coregonus clupeaformis (lake whitefish): 121586171
Help
Entry
121586171 CDS
T08357
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121586171 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
121586171 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586171 (arhgef1b)
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121586171 (arhgef1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PGDH_C
Motif
Other DBs
NCBI-GeneID:
121586171
NCBI-ProteinID:
XP_045076055
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MSIIGAEDEDFENDLEPMVDDHSSHFTSIELVKGRPTHLLVFLQHVILQFDCSSLLCYLH
ADLFKNLSTKETKKHFVDFYNSFLDKGAILRVQVPHNVSFELDRTRPDLLSEEQQKKFVQ
DVQLAQVPEVLRQLEDFRQKRMMGMTPNAAELMEVESHYPTDRIPMEMKEKAVAETLLDK
MSEIHPSIVADEEKCSSIFAAVAFYMKHLGVKSRVADSKKSRGFFRRPLGKSKKSEESTK
SKQKGGFPNILSAAGGWIAGSTEVKLPKVEAEVDKEKVNQERKASSGLAPSRGSSAPDAA
PPALNRKSVSTGSAPHQGSEVSEGSGVHISVTSSPDFSHSEIGLFNSRSDPQLVAEGGEV
SPAGLPGGLAIWEPPSPNELPPEENLDKDRRVGRSESARVDRHSSRRRGSSRAKQSRSRS
DVDLQAAAATAAHSSPTSPHPSVDEGVLLLEGALPGLSLSGPTPQQEEQDPRLLELEQDP
PNWREHTPPDTLKDLSKKETKRQEVINELFATEHAHVRMLSVLQTVFWKPLEREELMTTT
ELATIFPSLDEIIDMHYAFYEHLKKLRQHNFIVKAIGTTLLNRFGGTEGEWFQKLTSRFC
SHQTWALEQLKIRQKKDPRFNAFILEAESRPQCRRLQLKDIIPTEMQRLTKYPLLLENIA
KCTEDTLEKESIQQSAECCRKILNHVNEEVKQMENLLTLKDYQRRLDTSGLKPSNELYLE
YKNLDLAQRRMIYEGPLTWRVTKEKTLDVQCVLLGDLLVLLQKQDDKMVLKCQSKSNIAV
QEGKQMLSPIIKLDSAFLREVATDRKAFYVIFTWDSGAQIYELVAQSVGERKNWTDVIKT
AVDELKKKGPPPDLKRGNSILTGGNPYSPTTFLQPPLSPTENGGDSLKNSIERDKDSLTD
EIKSVDSRHSLIDYLLDKGFDLIGHSNSDQVKVANSALNEVMSLKRLLVGSISLSEDSQL
DEENGREGPESQDQGLEGEEGGGGGEDGGISAPLVLSQERMEEVRRKLQSLEVQLKRLQS
VEEEHHRLQQVLSKFSLEGGNF
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcatcggagctgaggatgaagactttgagaatgatctggaacctatggtggat
gaccacagcagtcacttcaccagtatagagctagtgaagggcaggccaacccacctgctg
gtcttccttcagcacgtcatcctgcagttcgactgctcctccctgttgtgttacctccat
gctgacctcttcaagaacctcagtaccaaagagaccaagaagcattttgtggatttctac
aacagcttcctggacaagggcgctattctcagagtacaagtccctcacaatgtatcgttt
gagttggaccgtaccagaccagacctgctcagtgaggagcagcagaagaagtttgtccag
gatgtccagttggctcaagtcccagaggtgttgcgacagctggaagacttcaggcagaag
aggatgatgggtatgacccctaacgcggcagagctgatggaggtggagtctcactacccc
accgatcgtatccccatggagatgaaggagaaggcagtggcagagaccctgctggacaag
atgtctgagatccatccctccatcgtcgcagatgaggagaaatgttcgtccatctttgca
gcagtggccttctacatgaagcacctaggagtgaagtccagagtagctgacagtaagaag
tccagaggcttcttcaggagaccccttgggaagagtaagaagagtgaggagtccactaaa
tccaaacagaaggggggttttcccaacatcctcagcgccgctggtggctggattgctggc
agcactgaggtcaaacttcctaaagtggaggctgaagtggataaagagaaggtgaatcag
gagcgtaaggcttccagcggcctcgccccctctcgaggctcctccgcccctgatgccgcc
cctccagcattaaacaggaagtctgtttccacaggatccgccccccatcaggggtcagag
gtcagcgagggttcaggggtccacatcagtgtgacctccagcccagacttctcccacagc
gagataggtctgttcaacagccgttcggacccccagttggtggcggaggggggcgaggtg
tcccccgcggggctgccaggggggctggctatatgggagcccccctcacccaatgaactc
cccccagaggaaaacctggacaaagacaggcgtgtgggacgcagtgagagtgctcgtgtg
gacagacattcctcccgtcgccgtggctcctcccgggccaaacagtcgcgttcccgtagc
gatgtggacctgcaagccgccgccgccacagcagcacactcctccccgacctctccccac
ccctctgttgatgaaggggtgttactcctcgagggtgcgctcccaggtctttccctctct
ggccccaccccccagcaggaggaacaggaccctcgcctcctggagctggagcaggacccg
cccaactggagagaacacacccccccagacaccctcaaagatctcagcaagaaggagacc
aagagacaggaggtcatcaatgagttgtttgcgacggagcatgcccacgtgcgcatgctg
agtgttctgcagacagtgttctggaagcctctggagagagaggaactcatgaccaccaca
gagctggccaccatcttccccagcctggacgagatcatagacatgcactatgctttctat
gagcacctgaagaagctgcgtcagcacaatttcatcgtcaaggccatcggaaccacgtta
ctcaacaggtttggagggacggagggtgagtggtttcagaagctgacgtctaggttctgt
agtcaccagacgtgggccctggaacagctgaagatcagacagaagaaagacccccgtttc
aacgccttcatactggaggcagagagtaggcctcagtgtcgtaggctgcagctgaaggac
atcatccccactgagatgcagaggctcaccaaataccccctactgctggaaaacatcgcc
aagtgcacagaggacaccttggagaaggagagtatccagcagagtgcagagtgctgtagg
aagatcctcaaccacgtcaacgaggaggtcaaacagatggagaacctgctgacactgaaa
gactaccagcgcaggctggacacctcaggactgaagcccagtaacgagctgtacctggaa
tacaagaaccttgacctggcccagagaaggatgatctatgaggggcctctgacctggaga
gtgaccaaggagaaaactttagacgtgcagtgtgtgttgctgggggacctgttggtgctg
ttacagaagcaggatgataagatggtgttgaagtgtcagagtaaaagtaacattgctgtt
caggagggcaagcagatgctcagccctatcatcaaactagactctgccttcctccgagag
gtggccacagatcgtaaggccttctacgtgatcttcacctgggacagcggggctcagatc
tacgaactggtggctcaatctgtcggggagaggaagaactggacagatgtgatcaagacg
gcggtagatgagctgaagaagaaaggacctccgcctgacctgaagagaggaaacagcatc
ctaactggaggaaacccatacagccccaccacgtttcttcaaccccctctcagccccaca
gaaaatggaggagactcgttgaaaaacagcattgaaagagataaggacagcctgactgat
gagattaagtctgtggactctcgtcattcgctgattgattacctcttggacaaaggcttc
gacttgattggccacagcaacagcgatcaggtgaaagtggccaatagcgcgttaaatgaa
gtcatgtctctcaagaggctattggttggcagcatcagcctatcagaggactcacagctt
gatgaggagaatggaagggaggggccagagagccaggaccaaggactggaaggggaggag
ggaggaggaggaggagaggatggggggatcagtgctcccctggttctgtcccaggagagg
atggaggaggtgcgccggaaactgcagagtctggaggtacagctgaagagactacagagt
gttgaggaagagcaccaccggctgcagcaggtcctgtctaagttctccctggagggaggc
aacttctag
DBGET
integrated database retrieval system
