Coregonus clupeaformis (lake whitefish): 123490781
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Entry
123490781 CDS
T08357
Name
(RefSeq) TNF receptor-associated factor 5-like
KO
K09849
TNF receptor-associated factor 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04217
Necroptosis
cclu04621
NOD-like receptor signaling pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
123490781
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
123490781
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
123490781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
123490781
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
123490781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
ATG16
zf-TRAF_2
NPV_P10
CorA
DUF948
EzrA
Spt20_SEP
Sina_ZnF
Laminin_II
DUF3450
Motif
Other DBs
NCBI-GeneID:
123490781
NCBI-ProteinID:
XP_045076591
LinkDB
All DBs
Position
Unknown
AA seq
364 aa
AA seq
DB search
MYYLSITQLEDHADQCPEVQTDCVYKKYGCSVREKRAQVQVHEENALNYHILLVLGSNTK
LETQMEILQQEVLLRHKELQERSRQVSGLEKEVRPLAQQVSRCDNTLSAVQRSLEEQRDH
ISSVQLQLEELSSVFGPGVAREELGQIRASLDALRQQVSVTEGLKDHLGELKETYLRHSR
LLSIHTAQLESNEEHFRELESTSYDGKLIWKLRDYRKRKEAGARGQGPCLSSAPFHTSRS
GYKMAARAYLNGDGAGRETHLSLYVVLMRGDFDPLLPWPFRQPVSLSVLDQSGTNNHLTM
SFKPDPENTSFHRPGLATATTNVASGFQCFASHAQLETPKNAIYVRDDTLFVKVKVDTSG
LEDL
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgtactatctctctatcacacagcttgaagaccatgctgaccagtgccctgaggtgcag
acggactgtgtttataagaaatatggctgctctgtccgggagaagagagcccaagttcaa
gttcacgaagaaaacgctctcaattaccacatcctcctggttctggggagcaacaccaag
ctggagacgcagatggaaatcctccagcaggaggtgctgctgaggcacaaagagctccag
gagaggagccgccaggtcagcggtctggagaaggaggtccgcccgctggcccagcaggtc
agccgttgtgacaacaccctgtctgcagtacagaggtctttggaggagcagagggaccac
atctccagcgtccagctccagcttgaggagctatccagtgtgtttggccctggtgtggcc
cgggaggaactgggccaaatcagagcgtccctggacgccctcagacagcaggtgtccgtc
acagaggggctcaaagaccacctgggggagttgaaggagacctacttacgccactcgcgc
ctcctcagcatccacacagcgcagctggagtccaacgaggagcacttcagagagctcgaa
tccacctcgtacgacggcaagcttatctggaagctccgcgactaccgcaagaggaaggag
gccggggctcgaggccagggaccgtgcctgagcagcgcacccttccacacgagccgcagt
ggctacaaaatggccgccagggcctacctgaacggcgacggggccggccgggagacccac
ctgtctctctacgtggtcctcatgaggggtgacttcgaccccctcctgccctggcccttc
agacaacctgtgtcattgtcagtgctggaccagagtggcaccaacaaccacctgactatg
agtttcaaacccgacccagaaaacactagtttccaccggcccggcttggccactgcaacc
accaacgtggcctctggtttccagtgctttgcctcgcatgcccagctggagacgcccaag
aacgccatctacgtgagagacgatacactctttgttaaggtcaaggtggacacaagcggt
ttggaggacttgtag
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