Capnocytophaga canimorsus: Ccan_16270
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Entry
Ccan_16270 CDS
T01582
Name
(GenBank) Polydeoxyribonucleotide synthase [NAD+]
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccm
Capnocytophaga canimorsus
Pathway
ccm03030
DNA replication
ccm03410
Base excision repair
ccm03420
Nucleotide excision repair
ccm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ccan_16270
03410 Base excision repair
Ccan_16270
03420 Nucleotide excision repair
Ccan_16270
03430 Mismatch repair
Ccan_16270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccm03032
]
Ccan_16270
03400 DNA repair and recombination proteins [BR:
ccm03400
]
Ccan_16270
Enzymes [BR:
ccm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ccan_16270
DNA replication proteins [BR:
ccm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ccan_16270
DNA repair and recombination proteins [BR:
ccm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ccan_16270
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ccan_16270
MMR (mismatch excision repair)
DNA ligase
Ccan_16270
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ccan_16270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
DNA_pol_lambd_f
HHH
Zn_ribbon_Top1
Zn_Ribbon_TF
Auto_anti-p27
Cac1_C
Motif
Other DBs
NCBI-ProteinID:
AEK23743
UniProt:
F9YRU2
LinkDB
All DBs
Position
complement(1756006..1758000)
Genome browser
AA seq
664 aa
AA seq
DB search
MDIKQTIETLRNELNQHNYNYYVLDTPSISDYEFDQKLKQLQDLEQKHPEFFDENSPTVR
VGGSVTKNFKTVTHQYRMYSLDNSYSKEELDEWEKRIIKMIGTDDIAFVCELKYDGASIS
LCYQKGKLVEAVTRGDGFQGDEITVNVRTIGSVPLILQGNYPEKFYIRGEIILPKKGFEQ
MNKERIEAGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYTLVGDHLADTHFENLQKA
REWGFKVPQEAQLCKSTQEVMDFVNYWDIHRHDLPYEIDGVVVKVNSIAQQEELGYTSKS
PRWAMAYKFKAEQVATTLQSISYQVGRTGAITPVANLTPVLLAGTVVKRASLHNADQIQK
LDVRVGDTVFVEKGGEIIPKIVGVDLQKRIDNSQPTQYITACPECGSALVRKEGEAQHYC
PNSYQCPPQITGKIQHFISRKAMDIEGLGGETIELFYREGLIANYADLYQITAEQLLPLE
RMAEKSAENILKGIENSKKIPFERVLFALGIRYVGETVAKKLARHYKNIDNLEKATFEEL
TQVDEIGVRIAESILFFFEDTYNQQVVSRLKSYGLQFALSEAHIQNQSEKLKGLTFVISG
VFQLHSRDELKNKIEQHSGKVASSISSKTNFVIVGDNMGPSKKEKAEKLGVKMISEQDFL
AMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaaacaaaccattgaaactttacgaaacgaactaaatcaacataattacaac
tattatgtgttggatactccttccatttctgactatgagtttgaccaaaaactcaaacaa
cttcaggacttggaacaaaaacatcctgagtttttcgacgaaaactcaccaacggttcgt
gtaggaggcagtgttactaaaaattttaaaactgtaacgcaccaatatcggatgtattca
cttgacaattcttattccaaagaagaattggacgagtgggaaaaacgcattattaaaatg
ataggaactgatgatattgcttttgtatgcgaactcaaatatgatggggcgtctatcagt
ttgtgttaccagaagggcaaattggtagaggccgttactcgaggtgatggttttcaaggc
gatgaaatcacagtgaatgtacgaactataggtagtgtacctcttatcttgcaagggaat
taccctgaaaaattttacatacgtggtgaaatcatactccctaaaaaaggtttcgagcag
atgaataaagaacgtattgaagctggagaagacccctatatgaatccaagaaatactgct
agtggaagcttgaaactgcaagatactacagaagtggcaaagcgtcctttggactgtttg
ctatatactttagtaggtgatcatttagccgatacacactttgaaaacctacaaaaagcc
agagaatggggctttaaagtaccgcaagaagcacaactttgcaaatccacccaagaggta
atggattttgtaaactattgggatatacatcggcacgatttaccctatgaaattgatggt
gtggtggttaaagttaatagtatagcccaacaagaggagttaggttatacctcgaaatca
ccacgttgggctatggcatacaagtttaaagccgaacaagttgcaactactctgcaaagt
atttcttatcaagtaggaaggacaggtgcgataactccggtggcgaatctgacccctgtt
ttactggcgggaactgtggttaaaagagcttcactacacaatgctgaccaaatacagaaa
ctagatgttcgggtgggagataccgtttttgtagaaaagggaggagaaattattcctaaa
attgtaggagttgatttgcaaaagagaatagataattctcagcccactcaatacattaca
gcttgccccgaatgtggctcagctttggttcgtaaagaaggagaagcccagcattattgc
cctaactcttatcaatgtccgccgcaaattacaggaaagatacagcattttatttcgcgt
aaagctatggatattgaagggttgggcggagaaaccatagagttattttatcgggaaggt
ctaatagccaattacgctgatttgtatcaaattacagctgagcaattactcccattggaa
cgaatggcagagaaaagtgccgaaaatattttaaaaggtattgaaaattctaaaaaaatt
ccttttgaacgagtactttttgcacttggcatacgctatgtgggtgaaactgtggctaaa
aaattggctcgacattataaaaatattgacaatctagaaaaagctacgtttgaggagctg
actcaagtagatgaaattggggttcgtattgctgaaagtattctttttttctttgaagat
acgtataatcaacaggttgtgagtcgattgaaatcatacgggttgcaatttgccttgtcg
gaagcgcatattcaaaatcagtccgaaaaacttaaaggactaacctttgttatttctgga
gtttttcaattgcacagcagggacgagttgaaaaacaaaattgagcaacacagcggtaag
gtagcaagttctatttcttcaaaaaccaattttgttattgtaggagataatatgggacca
agtaaaaaagaaaaagcagagaaattaggcgtcaaaatgatttctgaacaagatttttta
gcaatgatttcataa
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integrated database retrieval system
