Campylobacter concisus 13826: CCC13826_2023
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Entry
CCC13826_2023 CDS
T00593
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cco
Campylobacter concisus 13826
Pathway
cco03030
DNA replication
cco03410
Base excision repair
cco03420
Nucleotide excision repair
cco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCC13826_2023 (ligA)
03410 Base excision repair
CCC13826_2023 (ligA)
03420 Nucleotide excision repair
CCC13826_2023 (ligA)
03430 Mismatch repair
CCC13826_2023 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cco03032
]
CCC13826_2023 (ligA)
03400 DNA repair and recombination proteins [BR:
cco03400
]
CCC13826_2023 (ligA)
Enzymes [BR:
cco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCC13826_2023 (ligA)
DNA replication proteins [BR:
cco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCC13826_2023 (ligA)
DNA repair and recombination proteins [BR:
cco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCC13826_2023 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCC13826_2023 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCC13826_2023 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCC13826_2023 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
BRCT_2
RNA_lig_T4_1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
EAT98690
UniProt:
A7ZED8
LinkDB
All DBs
Position
complement(1298591..1300534)
Genome browser
AA seq
647 aa
AA seq
DB search
MTKQEYEKAVDTLNAWAKAYYDEDEPLASDEEYDALYHAVLAFEQANPSEISLFSPTKRV
GGGVKEGFSKASHIKRMWSMEDIFSLGELDAWLKRGEKENLTFVAEPKFDGASLNLLYEN
GVLVRAITRGDGVTGEDVTQNARTISSVPKSISYKGLIEIRGEVVIRKDDFELLNMERAK
EGEAPLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQSLGLKDHSEVMKFVRDLGFE
RDDFFKILKKDELEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLGYTVKFPKFMVAF
KFPAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNFDEIERLGVMKND
YIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPVCGSHLLDEGVFVKCQNLSCRARV
VGSIIHYASKKCLNIDGLGDAIVNLLFDKGLIACIKDIYGLKFDDLMSLEGFKEKKVNNL
LNAIEASKGAELSRFITGLGCEHIGEVAAKKLASSFGLDWLDASFEELTALEGFGVEMAN
SLIDFAEVNRDEILALSQIVQPSVTQVQSISNALSGKTVVITGTLSRPRDEIKAELESFG
AKVSGSVSKKTDFVLAGEEAGSKLDKANELGVLVIDESEYERLKLEV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacaagagtatgaaaaagcggtagatacgctaaatgcgtgggcaaaggcctac
tacgacgaggacgagccacttgcaagcgacgaggagtatgacgcgctatatcacgcggtt
ttggctttcgagcaggcaaatcccagtgaaatttcgctattttcgccgactaagcgagtg
ggcggaggcgtgaaagagggctttagcaaggcaagccacataaagcgcatgtggagcatg
gaggatatctttagtcttggcgagcttgatgcatggctaaagcgcggagagaaggagaat
ttgacctttgtagctgagccaaaatttgacggagcgagcctaaatttactctacgaaaat
ggcgttttagttagggcgataaccagaggagacggcgttacaggcgaggacgtgacgcaa
aatgcaaggaccattagctcggtgccaaagagcattagctacaaagggctcattgaaatt
cgtggcgaagtcgtcataagaaaagatgactttgagctattaaatatggagcgcgcaaaa
gagggcgaggcgccactttcaaaccctagaaacgcagccgcaggaagccttagacagctt
gatagcgcagtcactgcaaaaagaaagctactttttataccctggggcgtgggcgagcag
agccttgggctaaaagatcacagcgaggtgatgaaatttgtgcgagatcttggctttgag
agggatgattttttcaaaattttaaaaaaagatgagcttgaggctgcgtataacgagctc
ttggcaaatcgcgactcaaaaagcgtaatgatggatggcatggtgatacgtgtaaatgac
cttgcgcgctgtgagcagctaggatatacggtcaaatttccaaaatttatggtggcgttt
aaatttccagccattgagaaggtcacaaggctaaaagacgtggcacttcaggtcggtaga
agtggcgtggtgacgcctgttggcgtgcttgatgaggtaaatatagatggcgcaaatgta
aaatccgccactcttcataactttgatgagatcgagcgccttggcgtcatgaaaaacgac
tacatcggcatcatccgctcaggagatgtgataccaaagatcacaaaggtttttaaagat
agacgagatggcagcgagcaagcgatagaaaggcctaaattttgcccagtttgcggttcg
cacctgcttgatgaaggtgtctttgtaaagtgtcaaaatttaagctgcagggcaagagtg
gtgggctcgataatccactacgcatcgaaaaaatgcctaaatatcgacggccttggcgat
gcgatagtaaatttgctatttgacaaggggcttattgcttgcataaaagacatttacggc
cttaaatttgatgatcttatgtcgcttgagggctttaaagagaaaaaggtaaataacctt
ttaaatgccattgaggctagcaaaggtgcggagctatcgcgctttatcacgggccttggc
tgcgagcatatcggcgaggtggcggcaaagaagctagcaagtagctttggactggactgg
cttgatgctagctttgaggagctaaccgcacttgagggctttggcgtggagatggcaaat
agtttaatcgactttgctgaggtaaatagggacgaaattttagctttaagccagatcgtg
cagccaagcgtgacgcaggtgcaaagcatctcaaatgcgctaagtggcaagacggtcgtt
ataactggcacgctaagtcgcccaagagatgagataaaggcggagcttgagagttttggt
gcaaaggtttctggctcagtctctaaaaaaacggacttcgtcctagctggcgaagaggct
ggcagcaagctagataaggcaaatgagctaggcgtgctggtgattgatgagagcgaatat
gagaggctaaaacttgaggtttga
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