Cyphomyrmex costatus: 108776743
Help
Entry
108776743 CDS
T11118
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108776743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108776743
Enzymes [BR:
ccoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108776743
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108776743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
108776743
NCBI-ProteinID:
XP_018398947
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MVPNINDSRPSCAVFVLYMKMYWFRKGQQKLKGRESLTLGVLPNRGAGQLVKDVSFYPIL
RLLVPHLERQRGPHNLKQVSLANLYAHIYGFAKNSDSYKKLTNYREFSSDKFIGNDFADR
AYYVLNKKLPRIDTGLTIAQINEFLDSISERKMNVTKQQKVETFRVLFRQITGFEMKWMT
RIILKDLRLGIGPQKILHIYHPDANDKSLVTNDLREICNQLHNPKIKLKCSIQIFSYFKP
MLLERCNIENIGKLFRDNDLYYVQTKYDGERSQLHMKNGKFKYFTRRGYDITNKPGYGET
GSSGLLTAVFTRCLNSNCHSFILDGELMAWHKEKQIFSTKGMNVDVKHLLASSHHQPCFV
AFDVILHNDILLIDTPYEDRLKLLNDIFTEEEGSLTICRSTLISNREELIQEFNIRLRYN
EEGLVIKRYNMKYKPNIRDGNGCYKIKAEYTDNLIQDIDLIILGGYYGNGRYIGKIKSFM
MGVAAPTNKEGENPSQFFSVVSVSTGIGDEMLRHLQTKLAPYWIKDHPKNIISPKGNQPD
MWIHPEHSIILTIRASEMIRSNEYPIGYSLRFPRVMNVRMDKPWYNSCTTLELLSLAKNG
GMIQKLTKREATLHDCDQVSVSKLQKTMNRSKSIEYNTCNKRVVPLTRLLDGREICVING
DDELSKEEIEEILQQHSAKVVQNPVNTIFCVIVGNNKTIRGKEVINSGKYDVVTLDWVKR
VFNRSEWILSIDFLPWELLRSRNITRNQVTENYDGYYDSFVVDANEESLKRSFNKIEKSI
EFTESKLIIEQEKEMDKNLFGGTSPYSLFRDTVGFFENESCSAKFKFRFMSGKIENNINN
SVTHVFVEDNATSSIVKNMKACEQTSIKIVKCKWIEECFQNDRIYDITDYLINY
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggtacccaacatcaacgattctcggccttcctgtgctgtctttgttctttacatgaaa
atgtattggttcagaaaaggacaacagaagttgaaaggccgagaatcgttgacgttgggt
gtacttcctaataggggggccgggcagctggtgaaagatgtatcattttatcctatctta
agattgctagtacctcaccttgaacgacagcgtggaccgcataatttgaagcaagtttcg
ttggcaaatctttacgctcacatatatggtttcgcaaaaaatagcgacagttataaaaaa
ttgacaaattatcgagaattctcgtcggacaaatttataggaaatgatttcgctgatcga
gcttattacgtattgaataaaaagttacctcgaatcgatactggactcacgatcgcgcag
atcaacgaattccttgatagtatctccgaaagaaagatgaatgtaacgaagcagcaaaaa
gttgaaacgtttcgagtactttttcgacaaattacaggatttgagatgaagtggatgaca
cgtatcattcttaaagatttacgacttggtataggaccacaaaaaatactgcacatatat
catcccgacgcgaatgataaatctcttgtgacgaatgatctgcgcgagatttgtaaccag
ttacataatcctaagattaaattaaaatgtagtatacagatattttcatattttaaacca
atgctcttagagagatgcaatatcgaaaatatcggtaagttatttcgggacaatgactta
tattatgttcaaactaaatacgacggcgaaaggtcgcaactccatatgaagaatggaaaa
tttaaatacttcacacgtagaggatacgacattacaaacaaacctggatatggagaaact
ggatcttcgggtcttttaaccgcggtatttacgcggtgtttaaattcgaattgtcattct
tttatattggatggagaattaatggcttggcataaagagaaacaaatctttagtacaaaa
ggtatgaatgtcgacgtcaaacatttattggcgagcagtcatcatcaaccgtgtttcgtt
gcgttcgatgtgattctgcataatgacatcttgctcattgatacaccttatgaagacaga
ttaaaacttctcaacgatatattcaccgaagaggaaggttctctaactatatgtcgatct
actttaatttcaaatagggaagaattgatacaggaattcaatattcgcctccgttataac
gaggaaggacttgttataaagagatataatatgaaatataaaccaaatattcgagatggc
aatggttgttataaaattaaagcagagtatactgacaatttaatacaagatatagatctt
atcatacttggcggttattacggaaatggcaggtatataggaaaaattaaaagctttatg
atgggtgttgctgcaccaacgaacaaagaaggagaaaatccatcccaatttttctccgtc
gtatctgtaagcactggaataggagatgaaatgttacgtcatcttcaaacaaaacttgcg
ccatattggatcaaggatcatcctaaaaatattataagtcccaagggaaatcaaccagat
atgtggattcatccagaacattctataattttaacgatacgggcgtctgagatgatacgt
agtaatgaatatccaattggatacagtttacgatttcctagagttatgaatgtaaggatg
gataagccctggtacaattcatgtactactctcgaattactatcgttggccaaaaatgga
ggaatgattcaaaaattaaccaagcgggaagctactctacatgattgcgaccaagtatca
gtctctaaattacaaaagacaatgaatcgaagtaaatcgattgaatataacacgtgtaat
aagcgcgtagtaccacttacgcgactattagatggaagagaaatttgtgtgatcaatggt
gacgatgaattatcgaaagaggaaattgaagaaatattgcagcaacacagtgcaaaagtt
gttcaaaatccagttaatacgattttctgtgtgatagtaggcaataataaaacgatacga
gggaaagaagtaataaacagtggaaaatatgatgttgtaactctcgattgggtcaaacgt
gttttcaatcgatccgagtggatcttatcgattgattttttaccatgggaattattacgc
agtcgaaacattactagaaaccaagttacagaaaactatgatggatattatgatagtttt
gtcgttgatgcaaatgaggaaagtttgaagcgttcattcaacaagattgagaaatcgatt
gagtttacagagagtaagttgattattgagcaagaaaaagaaatggacaagaatttgttc
gggggcacatcgccttattcattgtttagagatacagttggattttttgagaatgaatcg
tgtagcgctaaatttaaattccgttttatgtcaggtaaaattgaaaacaacattaataat
tctgttacgcatgtttttgtagaagataacgctacgagttctattgtgaaaaatatgaaa
gcatgtgagcaaacatctataaagattgttaaatgcaaatggattgaggaatgtttccaa
aatgaccgaatatatgatataacagattacctaatcaactattga
DBGET
integrated database retrieval system
