Cyphomyrmex costatus: 108779610
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Entry
108779610 CDS
T11118
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03018
RNA degradation
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108779610
09123 Folding, sorting and degradation
03018 RNA degradation
108779610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108779610
03041 Spliceosome [BR:
ccoa03041
]
108779610
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108779610
mRNA degradation factors
5'-3' decay
Lsm complex
108779610
Spliceosome [BR:
ccoa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108779610
Complex C
U2 snRNP components
108779610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
CwfJ_C_1
Motif
Other DBs
NCBI-GeneID:
108779610
NCBI-ProteinID:
XP_018402559
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MVEESEQLPPIDVKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEII
NIVEIDEETYEEIYRQKKRTIQMLFVRGDGVILVSPPT
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagaatcagagcagttgccgccaatagatgtgaaggagccgctggaccttata
aagctaagcctggaggagcggatttatgtaaagatgagaaacgagagagaactcagagga
aaactacatgcctttgatcaacacctgaatatggtgttgggcgatgtggaagagattata
aacatagtggaaatcgatgaggaaacgtatgaggaaatctaccgccagaaaaagagaacc
atccagatgctatttgtgcgcggtgacggtgtcatcctggtatctccacccacgtaa
DBGET
integrated database retrieval system