KEGG   Corynebacterium comes: CETAM_05600
Entry
CETAM_05600       CDS       T07879                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ccoe  Corynebacterium comes
Pathway
ccoe03030  DNA replication
ccoe03410  Base excision repair
ccoe03420  Nucleotide excision repair
ccoe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CETAM_05600 (ligA)
   03410 Base excision repair
    CETAM_05600 (ligA)
   03420 Nucleotide excision repair
    CETAM_05600 (ligA)
   03430 Mismatch repair
    CETAM_05600 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccoe03032]
    CETAM_05600 (ligA)
   03400 DNA repair and recombination proteins [BR:ccoe03400]
    CETAM_05600 (ligA)
Enzymes [BR:ccoe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CETAM_05600 (ligA)
DNA replication proteins [BR:ccoe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CETAM_05600 (ligA)
DNA repair and recombination proteins [BR:ccoe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CETAM_05600 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CETAM_05600 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CETAM_05600 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CETAM_05600 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT Nlig-Ia HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: QGU04390
UniProt: A0A6B8W3J5
LinkDB
Position
1147772..1149823
AA seq 683 aa
MTESVSNLDPELRRQWNELAEEVRRHRDLYYNAKPEIPDADFDEIFRRLQRLEEEHPELA
VPESPTMEVGAPTAVTSTFANVEHLERMMSLDNVFDEDELREWLTRTPSETYLAELKIDG
LSLALVYRDGRLERAATRGDGRVGEDVTANARVIDDIPHELTATGEFPVPALLEVRGEVF
IAIEDFAEVNELRQVEGGKPFANPRNAAAGSLRQKNPEDVRKRRLRMISHGLGAREGFSP
VSQHDAYRALAAWGLPVSPYTEQIHSVEEVVSKVRYWAEHRHDADHEMDGLVVKVDSYAE
QRALGATSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMRPVFVAGSTVSMA
TLHNQTEVQRKGVLIGDTVVIRKAGEIIPEVLGPVVEKRDGSERGFIFPTLCPSCGTRLA
PQKEGDADWRCPNTRSCPAQLSSRLTYLAGRGAFDIEALGEKGAQDLIRTGILSDESELF
DLTAEKLLASKVYTTKTGKVNASGEKLLANLAEARNTELWRVIVALSIRHVGPTAARALA
TRYRSLPVLIDAPAEDIADTDGVGAIIAASFKSWFEVDWHRELVDRWAAAGVTMAETGGD
VADRTLEGLTIVVTGSLEGFSRDGAKEAIISRGGRASGSVSKKTDFVVVGENAGSKETKA
RDLGLTILDEAGFVRLLETGSAE
NT seq 2052 nt   +upstreamnt  +downstreamnt
gtgactgagtctgtgagtaacctcgaccccgagctgcgccgccagtggaatgaactggcc
gaggaggtccgccgccaccgggacctctactacaacgcgaagcccgagatcccggacgcc
gacttcgacgagatcttccggcgcctgcagaggctggaggaggagcaccccgagctcgcg
gtcccggagagccccaccatggaggtcggcgcccccacggccgtgacctccaccttcgcc
aacgtcgagcacctcgaacggatgatgagcctggacaacgtcttcgacgaggacgagctc
agggagtggctcacccgcaccccgagcgagacctatctcgccgagctgaagatcgacggg
ctgtcccttgcgctggtctaccgcgacggtcgtctcgaacgtgccgccacccgcggcgac
ggccgggtgggcgaggacgtcaccgccaacgcccgggtcatcgacgacatcccgcacgag
ctcaccgccaccggggagttccccgtgcctgcgttgctggaggtgcgcggcgaggtgttc
atcgccatcgaggacttcgccgaggtcaacgagctgcggcaggtcgagggcgggaaaccc
ttcgccaacccccgcaacgcggctgcgggatccctgcgccagaagaacccggaggacgtg
cgcaagcgtcgcctgaggatgatctcccacggcctcggcgcccgcgaaggcttcagcccc
gtctcccagcacgacgcctaccgggcgctcgccgcctggggcctgcccgtcagcccctac
acggagcagatccattcggtcgaggaggtggtgtcgaaggtccgctactgggcagagcac
cgccacgacgccgaccacgagatggacgggctggtggtcaaggtggattcctacgccgag
cagcgcgccctcggagccacctcacgcgcgccccgctgggcgatcgcctacaagtacccg
ccggaggaggtgaccacgaagctgctggacatccaggtcggcgtcggccgcaccggacgt
gtcacccccttcgcggtgatgaggcccgtgttcgtcgcaggttcaaccgtctccatggcc
accctgcacaaccagaccgaggtgcagcgcaagggcgtgctcatcggagacaccgtggtc
atccgcaaggcgggcgagatcatccccgaggtcctcggcccggtggtggagaaacgcgac
ggctccgagcgcgggttcatcttccccaccctgtgcccctcctgcggcacccgcctggcc
ccgcagaaggagggtgacgccgactggcgctgccccaacacccgctcctgcccggcgcag
ctgtcctcgcgtctgacctacctcgcgggccggggcgccttcgacatcgaggcgctgggg
gagaagggtgcccaggatctcatccgtaccggcatcctcagcgacgaatccgagctcttc
gacctgacggcggagaaactgctggcctcgaaggtctacaccaccaagaccggcaaggtg
aacgcctccggtgagaagctgctggccaacctcgcggaggccaggaacacggagctgtgg
cgggtgatcgtggcgctgtcgatccgccacgtcggcccgaccgccgcccgggcgctggcc
acccgataccgttccctgcctgtgcttatcgacgcccccgcggaagacatcgccgacacc
gacggcgtcggcgccatcatcgccgcatccttcaagtcctggttcgaggtcgactggcac
cgcgaactcgtcgatcgctgggccgccgccggcgtgaccatggcggagaccggcggcgac
gtcgcagaccggacgctggaggggttgaccatcgtggtcaccggctcgttggagggcttc
tcccgcgacggggccaaggaggcgatcatctcccggggcggcagggcgtcgggctcggtg
tcgaagaagaccgacttcgtcgtcgtgggcgagaacgccggctccaaggagacgaaggcc
cgcgacctgggcctgaccatcctcgacgaggccggcttcgtcaggcttctggagaccggt
tcggcggagtag

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