Campylobacter coli FB1: VC76_06350
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Entry
VC76_06350 CDS
T03870
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccof
Campylobacter coli FB1
Pathway
ccof03030
DNA replication
ccof03410
Base excision repair
ccof03420
Nucleotide excision repair
ccof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC76_06350 (ligA_1)
03410 Base excision repair
VC76_06350 (ligA_1)
03420 Nucleotide excision repair
VC76_06350 (ligA_1)
03430 Mismatch repair
VC76_06350 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccof03032
]
VC76_06350 (ligA_1)
03400 DNA repair and recombination proteins [BR:
ccof03400
]
VC76_06350 (ligA_1)
Enzymes [BR:
ccof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VC76_06350 (ligA_1)
DNA replication proteins [BR:
ccof03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VC76_06350 (ligA_1)
DNA repair and recombination proteins [BR:
ccof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VC76_06350 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VC76_06350 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
VC76_06350 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VC76_06350 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_5
N-glycanase_N
Motif
Other DBs
NCBI-ProteinID:
AJW58675
LinkDB
All DBs
Position
complement(1241746..1243689)
Genome browser
AA seq
647 aa
AA seq
DB search
MTKKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLK
DDFIKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGYTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLFKEKKINTLESIFHLKFSDFEGLEGFKEKKINNI
LNAIEQARDCELFRFITALGIEHIGEVAAKKLALSFGKEWHKQSLEAYANLEGFGEQMAL
SLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSRPRDEFKNLIESL
GGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaagagtatttagaaaaagttgccttggctgcttcttggatgagggcgtat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgctttaatcagagaatta
agagtttttgaagaacaaaataaagatgaaatttcaaaagactctccaacgcaaaaaata
gctcctactatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagggcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggcgccactagaggcgatggcgaagtgggtgaggatataacgcttaat
gtgcttgaaatcgacaatatcccaaaaactataaattataaagaaaagatagaaattcgt
ggagaagtggtgattttaaaagatgattttgagaaaatcaacgaaaaaagagccctttta
aatcaaagtttatttgccaatccacgcaatgctgcaagtgggagtttaaggcagcttgat
acaagtatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaattttaccaagcacagcgaagtgatgcaatttatcagagagcttggttttttaaag
gatgattttattaagctttgtgctaatttagacgaagttttaaaagcttataacgagctt
ttaagcctaagagatcaaaagcctatgatgatggatggaatggtggtaagagttgatgat
cttgcactttgcaaagagctaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcccgcacttgaaaaaaccacgcgtttaataggagtaaatttacaagtaggaaga
agcggagtgatcactcctgtggcggttttagaacctgtaaatttagatggggttgtagta
aaatcagccacacttcataattttgatgagattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggtgatgttatccctaaaatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacgccctaagctttgtcctacttgtcaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatattgattgtgaggatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggacttggagaa
aatatagtcgagcttttgtttaaagagaaaaaaataaacacacttgagagtatttttcat
cttaaatttagtgattttgaaggcttggaaggttttaaagaaaaaaagatcaataatatt
ttaaatgccattgagcaagcaagggattgtgagctttttcgttttattaccgccttgggg
atcgagcatattggagaagtggctgctaaaaagctagctttaagttttggtaaagaatgg
cataaacaaagtttagaagcttatgcaaatttagaaggttttggtgagcaaatggctctt
tctttgtgtgagttttctcgtgtaaatagtgcaagaattgatgagttttataagctttta
aatttaaaagagcaaaaggtgcaaattcaagaagatagtgttatttttggcaagactttc
gtgatcacaggcgcgctttcacgccctagagatgagtttaaaaatctaatagaaagtctt
ggaggtaaggttagtggatcggtttctaaaaagactgattatgtgctttttggtcaagaa
gcaggttctaaactcgacaaggctcaagagctgggtgtaaaatgtattgatgagaatgaa
ttcaatgagcttattgaaaaataa
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