KEGG   Campylobacter coli RM5611: YSU_02560
Entry
YSU_02560         CDS       T03167                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ccoi  Campylobacter coli RM5611
Pathway
ccoi03030  DNA replication
ccoi03410  Base excision repair
ccoi03420  Nucleotide excision repair
ccoi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccoi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YSU_02560
   03410 Base excision repair
    YSU_02560
   03420 Nucleotide excision repair
    YSU_02560
   03430 Mismatch repair
    YSU_02560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccoi03032]
    YSU_02560
   03400 DNA repair and recombination proteins [BR:ccoi03400]
    YSU_02560
Enzymes [BR:ccoi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     YSU_02560
DNA replication proteins [BR:ccoi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     YSU_02560
DNA repair and recombination proteins [BR:ccoi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     YSU_02560
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     YSU_02560
   MMR (mismatch excision repair)
    DNA ligase
     YSU_02560
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YSU_02560
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT Nlig-Ia BRCT_2 N-glycanase_N DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AHK74759
LinkDB
Position
510968..512911
AA seq 647 aa
MTKKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRTRL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLK
DDFVKLCTNLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDAKIND
FVSVIRSGDVIPKITKVFKERRDGLELDIARPRFCPTCKSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGESIVELLFKEKKINTLESIFHLKFSDFEGLEGFKEKKINNI
LNAIEQARDCELFRFITALGIEHIGEVAAKKLALSFGKEWHKQSLEAYANLEGFGEQMAL
SLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSRPRDEFKNLIESL
GGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgacaaaaaaagagtatttagaaaaagttgccttggctgcttcttggatgagggcgtat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgctttaatcagagaatta
agagtttttgaagaacaaaataaagatgaaatttcaaaagactctccaacgcaaaaaata
gctcctactatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagggcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggcgccactagaggcgatggcgaagtgggtgaggatataacgcttaat
gtgcttgaaatcgacaatatcccaaaaactataaattataaagaaaagatagaaattcgt
ggagaagtggtaattttaaaagatgattttgaaaaaatcaacgaaaaaagaactcgttta
aaccaaagcttgtttgcaaatccacgcaatgctgcaagtgggagtttaagacaacttgat
acaagtatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaattttaccaagcacagcgaagtgatgcaatttatcagagagcttggctttttaaaa
gatgattttgtaaagctttgtacaaatttagatgaggttttaaaagcttataacgagctt
ttaagcctaagagatcaaaagcctatgatgatggatggaatggtagtaagagtagatgat
cttgcgctttgcaaagagctaggtcatactgtgaaatttccaaaatttatggcagctttt
aaatttccagccttggaaaaaaccacgcgtttaataggggtaaatttgcaggttggaaga
agcggggttatcactcctgtggcggttttagagcctgtaaatttagatggggttatcgta
aaatctgccacacttcataattttgatgaaattgcaagacttgatgcaaagatcaatgat
tttgtaagcgtgataagaagtggtgatgtgataccaaaaatcactaaggtttttaaagag
cgtagggatggcttagagcttgatatagctagacctcggttttgccctacttgcaaaagc
gaacttttggatgagggaactttgatcaaatgtcaaaatattgattgtgaggatagactt
gtaaattctatcattcattttgtttctaaaaaatgtttaaatatcgacgggcttggagaa
agtatagtcgaacttttatttaaagagaaaaaaataaacacacttgagagtatttttcat
cttaaatttagtgattttgaaggcttggaaggttttaaagaaaaaaagatcaataatatt
ttaaatgccattgagcaagcaagggattgtgagctttttcgttttattaccgccttgggg
atcgagcatattggagaagtggctgctaaaaagctagctttaagttttggtaaagaatgg
cataaacaaagtttagaagcttatgcaaatttagaaggttttggtgagcaaatggctctt
tctttgtgtgagttttctcgtgtaaatagtgcaagaattgatgagttttataagctttta
aatttaaaagagcaaaaggtgcaaattcaagaagatagtgttatttttggcaagactttc
gtgatcacaggcgcgctttcacgccctagagatgagtttaaaaatctaatagaaagtctt
ggaggtaaggttagtggatcggtttctaaaaagactgattatgtgctttttggtcaagaa
gcaggttctaaactcgacaaggctcaagagctgggtgtaaaatgtattgatgagaatgaa
ttcaatgagcttattgaaaaataa

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