KEGG   Campylobacter coli 76339: BN865_08610
Entry
BN865_08610       CDS       T02811                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ccol  Campylobacter coli 76339
Pathway
ccol03030  DNA replication
ccol03410  Base excision repair
ccol03420  Nucleotide excision repair
ccol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN865_08610
   03410 Base excision repair
    BN865_08610
   03420 Nucleotide excision repair
    BN865_08610
   03430 Mismatch repair
    BN865_08610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccol03032]
    BN865_08610
   03400 DNA repair and recombination proteins [BR:ccol03400]
    BN865_08610
Enzymes [BR:ccol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BN865_08610
DNA replication proteins [BR:ccol03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN865_08610
DNA repair and recombination proteins [BR:ccol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BN865_08610
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN865_08610
   MMR (mismatch excision repair)
    DNA ligase
     BN865_08610
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BN865_08610
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase BRCT HHH_2 PTCB-BRCT BRCT_2 Nlig-Ia HHH_5 N-glycanase_N DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: CDG57081
LinkDB
Position
813375..815318
AA seq 647 aa
MTKKEYLEKVALAASWMRAYYEKDEPLASDAEYDALIRELRAFEEQNENEISPDSPTQKI
APAIQSEFKKLSHLSRMWSMEDVFDESELRAWAKRARCEGNFFIEPKFDGASLNLLYDNG
RLISGATRGDGEIGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRARL
NQSLFANPRNAASGSLRQLDTSITRERNLKFYPWGVGQNSLEFGKHSEIMSFIRELGFLK
DDFVKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDAKIND
FVSVIRSGDVIPKITKVFKERRDGLELDIARPQFCPTCKSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGESIVELLFKEKKITTLESIFHLKFSDFEGLEGFKEKKINNI
LNAIEQARDCELFRFITALGIEHIGEVAAKKLALSFGKEWHKQSLEAYTNLEGFGEQMAL
SLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSRPRDEFKNLIESL
GGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgacaaaaaaagagtacttagaaaaagttgccttggctgcttcttggatgagggcgtat
tatgaaaaggatgagcctttagcaagtgatgcagaatacgatgctttgattagagaatta
agagcttttgaagagcaaaatgaaaatgaaatttctcctgattctcctacgcaaaaaata
gcccctgctatacaaagcgaatttaaaaaactttctcatttaagtcgtatgtggtcgatg
gaagatgtttttgatgagagcgagcttagagcatgggcaaagcgtgcaagatgtgaaggg
aatttttttatagagcctaaatttgacggagcaagcttaaatttgctttatgataatggt
agactaataagcggtgcgacaagaggagatggggaaataggcgaggatatcacacttaat
gtgcttgaaatcgacaatatcccaaaaactataaactataaagaaaagatagaaattcgc
ggcgaagtggtgattttaaaagatgattttgaaaaaatcaatgaaaaaagagcccgttta
aaccaaagcttgtttgccaatccacgaaatgccgcaagtgggagtttaagacaacttgac
acaagcatcacaagagaaagaaatttgaaattctatccttggggggtagggcaaaactca
cttgaatttggtaaacacagcgagattatgagttttataagagagcttggttttttaaaa
gatgactttgtaaagctttgtgcaaatttagatgaggttttaaaagcttataacgagctt
ttaagcctaagagataaaaagcctatgatgatggatggaatggtagtaagagtagatgac
cttgcactttgtaaagagctaggtcatactgtgaaatttccaaaatttatggcagctttt
aaatttccagctttagaaaaaactacgcgtttaataggggtaaatttgcaggttggaaga
agcggggttatcactcctgtggcggttttagagcctgtaaatttggatggagttatcgta
aaatctgccacacttcataattttgatgaaattgcaagacttgatgcaaagatcaatgat
tttgtaagcgtgataagaagtggtgatgtgataccaaaaatcactaaagtttttaaagag
cgtagagatggcttagagcttgatatagctagacctcagttttgccctacttgcaaaagc
gaacttttagatgagggaactttgatcaaatgtcaaaatattgattgtgaagataggctt
gtaaattctatcattcattttgtttctaaaaaatgtttaaatatcgacggacttggagaa
agtatagtcgaacttttatttaaagagaaaaaaataaccacccttgagagtatttttcat
ctcaaatttagtgattttgaaggcttggaaggttttaaagaaaaaaagatcaataatatt
ttaaatgctattgagcaagcaagggattgtgagctttttcgttttatcactgctttgggg
atcgagcatattggagaagtagctgctaaaaagctagctttaagttttggtaaagaatgg
cacaaacaaagtttggaagcttatacaaatttagaaggttttggtgagcaaatggctctt
tctttgtgtgagttttctcgtgtaaatagcgcaagaattgatgagttttataagctttta
aatttaaaagagcaaaaagtacaaattcaagaagatagtgttatttttggcaagactttt
gtgatcacaggcgcactttcgcgccctagagatgagtttaaaaatctaatagaaagtctt
ggaggcaaggttagcggatcggtttctaaaaagactgattatgtactttttggtcaagaa
gcaggctctaaactcgacaaagctcaagagttgggtgtaaaatgtattgatgagaacgaa
tttaatgagcttattgaaaaataa

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