Coprococcus comes: I6K69_05410
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Entry
I6K69_05410 CDS
T07118
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccom
Coprococcus comes
Pathway
ccom03030
DNA replication
ccom03410
Base excision repair
ccom03420
Nucleotide excision repair
ccom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6K69_05410 (ligA)
03410 Base excision repair
I6K69_05410 (ligA)
03420 Nucleotide excision repair
I6K69_05410 (ligA)
03430 Mismatch repair
I6K69_05410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccom03032
]
I6K69_05410 (ligA)
03400 DNA repair and recombination proteins [BR:
ccom03400
]
I6K69_05410 (ligA)
Enzymes [BR:
ccom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6K69_05410 (ligA)
DNA replication proteins [BR:
ccom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6K69_05410 (ligA)
DNA repair and recombination proteins [BR:
ccom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6K69_05410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6K69_05410 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6K69_05410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6K69_05410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
HHH
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QRT50728
LinkDB
All DBs
Position
complement(1083029..1084990)
Genome browser
AA seq
653 aa
AA seq
DB search
MDKMKRMQELVELLNKAGKAYYQDAQEIMSNYEYDALYDELKGLEEELGTVMASSPTVNV
GYEVLSELPKERHESPMLSLDKTKEVARLKEFVGDQMAVISWKMDGLTIVLTYRDGELFK
AVTRGNGEVGEVITNNAKVFKNVPLHIPYKGELILRGEAVIGYKDFERINEEIDDVDAKY
KNPRNLCSGSVRQLNNKITAQRNVKFYAFTLVRAENVDFHNSRKEQLDWLEHQGFDVVEH
YLVTREELDEKVAFFAEKIVENDFPSDGLVLVYDDIAYGQSLGRTAKFPRDSFAFKWADE
IRETHLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSIMEELHLGIGDTIEVY
KANMIIPQIAKNLTGSDNIEIPKVCPVCGGATEIRQMNDAKSLYCTNPMCQAKRIKSFAL
FVSRDALNIDGLSEATLEKFIARGFIHKYRDIFHLDFYQEEIQTMEGFGEKSYANLIASV
DKARSTTLAKVVYGLGIAGIGLANAKLICRHFKNDVEKMTGASEEELSDIQGVGPVLAAA
FVKYFISEERKKEFKLLLGELEIQPEEMAEEQKFAGMSFVITGSVNHFANRNEVKELVEK
MGGKVTGSVTKKTNYLINNDVESASSKNRKAKELGVPIISEEEFIELAGVEIE
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggataagatgaaaaggatgcaggagctggtagagcttctgaataaagccggaaaagct
tattatcaggatgcgcaggaaattatgagcaattatgagtatgatgcgctgtatgatgaa
ctgaaaggtctggaagaagagctgggaaccgttatggcttccagtccgacggtgaatgta
ggatatgaagtattaagtgagcttccgaaagaacgtcatgagtcaccgatgctttctctt
gacaaaacaaaagaagtggcaaggctgaaggaatttgtcggagaccagatggctgtgatc
tcatggaagatggatggtctgacgatcgttctgacctatcgtgacggcgaactttttaag
gcagttacaagaggaaatggggaagtcggtgaggtcattaccaacaatgcgaaagtattt
aaaaacgtgccgcttcatattccgtataaaggggaactgatcctgcgaggggaagcggtg
atcggttacaaagattttgagcggatcaatgaagaaattgatgacgtggatgcaaaatat
aaaaatccacggaatctgtgcagtggttctgtccgccagctgaacaacaagatcacggca
cagagaaacgtaaaattctatgcatttaccctggtacgtgcagaaaatgtggatttccac
aattccagaaaagaacagcttgactggctggaacatcagggatttgatgtggtggagcat
tatctggtgacaagggaagaactggatgagaaggttgcattttttgcagaaaagatcgta
gaaaatgattttccgtcagatggtctggttcttgtatatgatgacattgcgtatgggcag
tcgcttgggagaacggcaaaattcccacgagattcttttgctttcaaatgggcagatgag
atccgcgagacgcaccttctggagattgaatggagtccatcaagaacagggcttattaat
ccggtagcaatctttgaaccggtagagctggaaggaacaacggtaagccgtgcaagtgta
cacaatttaagtattatggaggagctgcatctgggaatcggggatacgatcgaagtctat
aaagcgaatatgatcattccgcagattgcaaagaatctgaccggcagtgataatattgag
attccgaaagtctgtccggtttgtggtggagctacggagatccgtcagatgaatgatgca
aagtcgttgtattgcacaaatccgatgtgtcaggcaaaaagaatcaaatcctttgcattg
tttgtcagcagggatgcactcaatattgacggtctttctgaggcgacactggagaaattt
attgcgagaggattcattcacaaatacagagatatcttccatctggatttctatcaggaa
gaaattcagacgatggaaggctttggagaaaaatcctatgcgaacctgatcgcaagcgtg
gataaggcgagaagcacaacacttgctaaagtggtatatggacttgggattgcaggaatc
ggtctcgcaaatgcaaaactgatctgccgccattttaaaaatgatgtggaaaaaatgaca
ggagcatcggaagaagaactgagtgatatccagggggtaggtccggtgcttgcggcggca
tttgtaaaatattttatatcagaggaaagaaaaaaagaatttaagctccttctcggagaa
ctggagatccagccggaagagatggcagaggaacagaaatttgcaggtatgagtttcgtt
atcactggcagcgtgaatcattttgcaaaccggaatgaggtaaaagaactggttgagaag
atgggtggaaaagtgaccggatctgtaacgaagaagacaaattatctgatcaacaatgat
gtagagtctgcttcttccaagaacaggaaggcgaaagaacttggagtgccgatcatttca
gaggaagagtttatagaacttgcaggggtggaaatcgaataa
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integrated database retrieval system
