Cronobacter condimenti: AFK62_19680
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Entry
AFK62_19680 CDS
T04060
Symbol
ligB
Name
(GenBank) aromatic ring-opening dioxygenase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03030
DNA replication
ccon03410
Base excision repair
ccon03420
Nucleotide excision repair
ccon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFK62_19680 (ligB)
03410 Base excision repair
AFK62_19680 (ligB)
03420 Nucleotide excision repair
AFK62_19680 (ligB)
03430 Mismatch repair
AFK62_19680 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccon03032
]
AFK62_19680 (ligB)
03400 DNA repair and recombination proteins [BR:
ccon03400
]
AFK62_19680 (ligB)
Enzymes [BR:
ccon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AFK62_19680 (ligB)
DNA replication proteins [BR:
ccon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AFK62_19680 (ligB)
DNA repair and recombination proteins [BR:
ccon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AFK62_19680 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFK62_19680 (ligB)
MMR (mismatch excision repair)
DNA ligase
AFK62_19680 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFK62_19680 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
ALB64838
UniProt:
K8AFM5
LinkDB
All DBs
Position
complement(4273609..4275294)
Genome browser
AA seq
561 aa
AA seq
DB search
MRITILLLLIGLTCESASAACPGWTPTQARQEVAALQNQLARWDDAYWLHGENKVSDAVY
DGMRQRLKTWQACFALPAVSDAPLSIAAGRTPHPVAHTGVQKFKDAAAVSQWMQGKTDLW
VQPKVDGIAVSLVYRKGELSQVISRGDGLRGEDWTARARHIPAIPQQVNGELADSVLQGE
LFLRRDGHRQQQDGGLNARARVAGAMMRNTESSVLNNLDIFIWAWPDGPKAMSLRLSALA
ESGFPLAQAWSKPVSSVADVARLRERWFSEALPFGTDGVVVREGNEPPGRSWRPGEGTWV
AAWKYPPAKQVTEVKALRFAVGRTGKISVVALLEPVTLDDKQVAKVSVGSLARWQRLDLA
EGDQVEVSLAGQGIPRLDAIVWRPVERNKPEPPSAHFDALSCLYVSSGCEAQFISRLVWL
SGEPVLDIKGVGEATWRQLSRSHHFEHLFSWLSLNVDALKQTPGLSPRRAMRLWHQFNLT
RQQSFKRWIKALGLSLPARAWQALADGSWQQMQARDELSWQTLPGIGAERARQLVSYVHH
PKIAALARWLAEQKIEGFTLP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcataacgattttactattactgatcggcttaacgtgtgaaagcgcaagtgcggct
tgccctggctggacgcccacacaggcgcgacaagaggtcgctgcgctgcaaaatcagctg
gcgcgctgggatgacgcttattggttgcatggcgagaacaaggtgagcgatgcggtctat
gacggcatgcgtcaaaggctaaaaacgtggcaagcctgctttgcgctacccgccgtgagc
gacgcccccttatccatagccgcgggccgaacgcctcatccggtcgcccacactggcgta
caaaagtttaaagatgccgccgcggtatcgcagtggatgcaaggaaaaaccgatctttgg
gtacagccaaaagtcgatggtatcgcggtttctctggtttatcgcaagggcgagctaagc
caggtcattagccggggcgacgggttacgaggcgaagactggactgcgcgcgcgcgtcat
attccggccattcctcagcaggtgaacggtgagcttgctgacagcgtattgcagggcgag
ctttttttacgccgggacgggcatcgtcagcagcaggacggtgggctcaacgcgcgtgct
cgcgtcgcgggggcgatgatgcgcaataccgagtcttcggtgcttaataatctggatatt
tttatctgggcgtggccggatgggcctaaggcgatgagtttacgtttgtcggcgcttgcg
gaaagcgggtttccgttagcgcaagcctggagcaagccagtgagttctgtggcggacgtc
gcgcgcttacgtgagcggtggttcagcgaggcgcttccttttggtaccgatggtgtggtc
gttcgcgagggcaatgagccgcccgggagaagctggcgtccaggcgaaggtacgtgggtg
gccgcctggaaatatccacccgcgaagcaggtcaccgaggtcaaagcattgcgtttcgcc
gtcggccgtaccggaaaaatcagcgtagtcgcgctgctggagcccgttacgctggatgac
aagcaggtcgcgaaagttagcgtagggtcattagcacgctggcaaaggctggatcttgct
gaaggcgatcaggtagaagtgagtcttgcaggacagggcattccacggcttgatgctatt
gtctggcggcctgtggagcgtaacaagcccgagccaccttccgcgcatttcgatgcgtta
agttgtctctatgtatcaagcggatgtgaggcgcaatttatttctcgtctggtctggttg
agtggagaacctgtattagatatcaagggtgtgggcgaggcgacatggcgtcagttatcg
cgcagccaccactttgaacatctcttttcctggctttcgcttaatgtcgatgcattgaag
caaacaccggggttgagtcctcgacgcgcgatgcggctctggcaccagttcaatcttacg
cgtcagcaatcttttaagcgttggattaaggcgttagggctgtccttaccggctcgggcg
tggcaagcgctggctgatggctcatggcagcaaatgcaggcacgtgatgaactgagttgg
caaacgctgccggggataggcgcagaacgtgcacgccagctggtcagttacgtgcaccac
cctaaaattgctgcactggcgcggtggctggcggaacagaaaatagaagggtttacgctg
ccatga
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