Crateriforma conspicua: Mal65_30640
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Entry
Mal65_30640 CDS
T09863
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccop
Crateriforma conspicua
Pathway
ccop03030
DNA replication
ccop03410
Base excision repair
ccop03420
Nucleotide excision repair
ccop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mal65_30640 (ligA)
03410 Base excision repair
Mal65_30640 (ligA)
03420 Nucleotide excision repair
Mal65_30640 (ligA)
03430 Mismatch repair
Mal65_30640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccop03032
]
Mal65_30640 (ligA)
03400 DNA repair and recombination proteins [BR:
ccop03400
]
Mal65_30640 (ligA)
Enzymes [BR:
ccop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mal65_30640 (ligA)
DNA replication proteins [BR:
ccop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mal65_30640 (ligA)
DNA repair and recombination proteins [BR:
ccop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mal65_30640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mal65_30640 (ligA)
MMR (mismatch excision repair)
DNA ligase
Mal65_30640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mal65_30640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QDV63917
LinkDB
All DBs
Position
3959782..3961860
Genome browser
AA seq
692 aa
AA seq
DB search
MTDKSVAEEVQSLRQQIRHHDRLYYVDATPEISDLQYDRLLKRLQQLEQDHPDLRDRDSP
TMRVGDQPVAHLDQVAHRVPMLSIDNTYSRDELQAYFERTEKSLDGKPIRWVMEYKIDGV
AASVRYESGRMVLALTRGNGEVGDDITHNIRTVRDLPLILHDNGSVPDVLEIRGEVYMTN
ADLADLNVRQAERGEPLYKNTRNVTAGTIRLLDPAIAAQRNLRFFAHGIGEVSGMDADNH
MEFLKRLGDFGIPPTPDVMVFDHWSDAMKAVAALEDEMPDLPFEVDGIVFKVDDFANREK
LGIRSKSPRWLVAYKFERYEATTRLNQITVQVGKTGTVTPVAHLDPVEIAETTVSRASLH
NADEIERLDVREGDVVVVEKAGKIIPKVVRVEKHLRTDDLKPYAFPKRCPECDTDLVRDE
GGVYIRCPNPACPAQLRQKLIYFGSRTGMDIDGLGDELVDVLLDRGLVKTYGDLYRLTAD
QVAELNWIRLRKGRDGKEIEVQVGQKNADSLIQGIDASRDRGLARVLASLSIRHVGPSVA
RIITGKYHTLDLLREASQEDLADIHEIGDRIASSLHEFIHSDVGRQTLNDLAAAGVKMTD
PEPVPDDDDQRWLSGKTLVVTGTLKHFKRDEIKKAITELGGRASGSVSKNTDFLVAGEKA
GSKLDKAKQLGVRVVDEDEFRAWLADNRIHDA
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaagtcggtcgccgaggaagttcagtcgctgcgccagcagattcgacatcac
gatcgactgtactacgtcgacgcgacgccggaaatcagcgatctgcagtacgaccgcctg
ctgaagcgtttacagcaactggaacaggatcaccccgacctgcgtgatcgcgattcgccc
acgatgcgggtcggcgatcaaccggtcgcgcacctggaccaggtcgcccatcgcgtgccc
atgttgtcaatcgataacacgtacagtcgcgatgaattgcaagcctattttgaacgcacc
gaaaaatccctggacggcaaaccgatccggtgggtgatggaatacaaaatcgatggcgtc
gcggcgtcggtgcgatacgaatcgggacgcatggtgctggcgctgacccgtggcaacggc
gaagtcggcgatgacatcacgcacaacattcgaacggttcgcgatctgcccctgatcctg
cacgacaacggatcggtaccggatgttttggagattcgcggcgaagtctacatgaccaat
gcggacttggccgatttgaatgtccgtcaagccgaacgcggcgaaccgctatacaagaac
acacgcaacgtgactgcgggcacgatccgattgctggatcccgcgatcgccgcccagcga
aacctgcgtttctttgcacacggcatcggcgaagtgtcgggcatggacgcggacaaccac
atggaatttttgaaacggctcggggactttggcattccgccgacacccgacgtgatggtg
ttcgaccattggtccgacgcgatgaaagcggtcgcggcgttggaagacgaaatgccagac
ctgccgttcgaagtcgacgggatcgtttttaaagtcgacgactttgccaaccgcgaaaaa
cttggcattcgcagtaagagcccgcgttggttggtcgcgtacaagtttgaacgctacgaa
gccaccacacgactgaaccagatcacggtccaagtcggcaaaaccggaaccgtcacaccg
gtggctcatctggatccggtggaaatcgccgaaaccaccgtctcccgcgcttcgttgcat
aacgctgatgaaatcgagcggctggatgtccgcgaaggcgacgtcgttgtggttgaaaaa
gccggcaagatcatccccaaggtcgtgcgcgtcgaaaaacaccttcgcactgacgacttg
aaaccctacgcctttcccaagcgatgtcccgagtgtgataccgatctggttcgggatgaa
ggcggtgtctacatccgatgccccaacccagcgtgccccgcgcagttgcgtcaaaagctg
atctatttcggcagccgcacgggcatggacattgatggtctgggcgacgaattggtcgac
gttctgctggaccgtggattggtcaaaacgtatggcgacctttatcgattgactgctgac
caagtcgccgaattgaattggatccgattgcggaaaggacgcgacggcaaagagatcgaa
gtccaggtgggacagaagaatgcggacagcctgatccaagggatcgacgccagtcgtgat
cgtggtttggcacgagtgctggcatcgctttcaatccgtcacgtcggtcccagtgtcgcg
cggatcatcacaggcaaataccacacgttggatctgcttcgcgaagcatcacaagaagac
ttggccgacattcacgagatcggtgaccggatcgccagcagtctgcacgaattcatccac
agtgatgttggtcgccaaacgctgaacgacctggctgcggccggcgtcaagatgaccgat
cccgaaccggtgcccgatgatgacgaccaacggtggctgtcgggcaagaccctggtcgtc
acgggcacgctgaaacacttcaagcgtgacgaaatcaaaaaggcgatcaccgaacttggg
ggacgggccagcggcagcgtcagtaagaacacggatttcctggtcgccggtgaaaaggcc
ggcagcaagctggacaaggccaaacaattgggcgttcgggtcgtcgacgaagacgaattt
cgcgcatggttggccgacaatcgcatccatgacgcgtga
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