Corynebacterium confusum: CCONF_05155
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Entry
CCONF_05155 CDS
T09352
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccou
Corynebacterium confusum
Pathway
ccou03030
DNA replication
ccou03410
Base excision repair
ccou03420
Nucleotide excision repair
ccou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCONF_05155 (ligA)
03410 Base excision repair
CCONF_05155 (ligA)
03420 Nucleotide excision repair
CCONF_05155 (ligA)
03430 Mismatch repair
CCONF_05155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccou03032
]
CCONF_05155 (ligA)
03400 DNA repair and recombination proteins [BR:
ccou03400
]
CCONF_05155 (ligA)
Enzymes [BR:
ccou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCONF_05155 (ligA)
DNA replication proteins [BR:
ccou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCONF_05155 (ligA)
DNA repair and recombination proteins [BR:
ccou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCONF_05155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCONF_05155 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCONF_05155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCONF_05155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WJY89576
LinkDB
All DBs
Position
1105590..1107650
Genome browser
AA seq
686 aa
AA seq
DB search
MQREWNELAQEVRRHRQLYYNEQPVIPDADFDKLFRRLQELEEKHPELAVPDSPTREVGA
ASPFADVQHLERMMSLDNVFSEAEMRDWLTRTPAKTYLTELKIDGLSIDLVYRSGRLGSA
ATRGDGQVGEDITANARVIEDIPQQLQVTADFPVPELVEVRGEVYMRPEDFAAINAERVE
DGKPAFANPRNSAAGGLRMKDPAEVKKRRLKMVCHGIGAREGFSPDSQYHAYQALAAWGL
PVSPYTEQVHSAEEVIERVNYWADHRHDAIFEMDGLVVKVDDLASQRQLGATSRAPRWAI
AYKYPPEEVTTVLRDIQVGVGRTGRVTPFAVMDPVFVSGSTVSMATLHNQSEVKRKGVLV
GDTVVIRKAGEIIPEVLGPVVEARDGSEVEWTFPENCPSCGTSLAPQKEGDADWRCPNTR
SCPAQLSARLEYLASRKALDIEALGEKGAWDLIEQGILEDEAELFELTEDKLLASDVYTS
KADKKAKGPKSADNIAVNTVGRALLDNLGEAKERDFWRVLVALSIRHVGPIAARALATRY
GSMEALRAADVEELAETEGVGTIIAESFKSWFEVDWHVNIVERWAAAGVRMEVAAESRRP
QTLEGLTIVVTGTLEGYSRDEAKEAIVGRGGKATGSVSKKTDFLVAGENAGSKEQKAQDL
GVPILNEAGFEDLLAHGAPAGEDADG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgcaacgcgaatggaacgagctcgcccaggaagtgcggcggcaccggcagctctactac
aacgagcagccggtgatcccggatgccgactttgacaagctcttccggcgcctgcaggag
ctggaggaaaagcacccggagttggcggtcccggattcgccgacgcgcgaggtgggcgcg
gcctcgccgttcgccgacgtccagcacctcgagcgcatgatgagcctggacaacgtcttc
agcgaggcggagatgcgcgactggctcacccgcaccccagccaagacctacctgaccgag
ctgaagatcgacgggctctccatcgacttggtctaccgttccgggcgcctgggctccgcg
gccacccgcggcgacggccaggtcggcgaggacatcacggccaacgcccgggtcatcgag
gacatcccgcagcagctgcaggtcaccgcggacttcccggtgccggagctggtcgaagtc
cgcggcgaggtctacatgcggccggaggacttcgccgcgattaacgccgagcgcgtcgag
gacggcaagcccgcgttcgccaacccgcgcaactccgcggccggcgggctgcggatgaag
gacccggcggaggtgaaaaagcggcggctgaagatggtctgccacggcatcggcgcccgc
gagggcttcagcccggattcgcagtaccacgcctaccaggccctggcggcctgggggctg
ccggtctcgccgtacaccgagcaggtgcactcggcggaagaagtcattgagcgcgtgaac
tactgggccgatcaccgccacgacgccatcttcgagatggacggcctcgtggtcaaggtc
gatgacctggcgtcccagcgccagctgggcgcgacctcccgggcgccgcgctgggcgatt
gcttacaagtacccgcccgaggaggtcaccaccgtcctgcgggatatccaggtcggcgtg
ggccgcaccgggcgcgtgactccgttcgcggtgatggacccggtcttcgtctccggctcg
acggtgtccatggccaccctgcacaaccagtccgaggtcaagcgcaagggcgtgctggtg
ggcgacaccgtggtcatccgcaaggccggcgaaatcatccccgaggtcttggggccggtc
gtcgaggcccgcgacggcagcgaggtcgagtggaccttccccgaaaactgcccgtcctgc
ggcacctcgctcgcgccgcaaaaagagggcgacgccgactggcgctgcccgaacacccgc
tcgtgcccggcgcagctgtcggcgcggctggagtacctggcctcccgcaaggcgctcgac
atcgaggcgctgggggagaagggagcctgggatctcatcgagcagggcatcctggaagac
gaggccgagcttttcgagctgaccgaagacaagctgttggcctccgacgtctacacctcc
aaggcggataagaaggcgaaggggccgaagtccgcggacaacatcgcggtcaacacggtc
ggccgcgcgctgctggacaacctgggcgaggccaaggagcgcgacttctggcgcgtgttg
gtggccctgtccatccggcacgtcgggcccatcgcggcgcgggcgttggccacccgctac
ggctcgatggaggcgctgcgcgcggccgacgtcgaggagctggcggagaccgagggcgtg
ggcaccatcatcgcggagtccttcaaatcctggttcgaggtcgattggcacgtcaatatc
gtggagcgctgggccgccgcgggcgtgcgcatggaggtcgcggccgagtcccggcgcccc
cagaccctggagggccttactatcgtggtcaccggcaccctggaaggctacagccgcgac
gaggccaaagaggccatcgtcggccgcggcgggaaggccaccggctccgtgtccaagaag
accgacttcctggtcgccggggaaaacgccggatccaaggaacagaaggcccaggacctg
ggcgtgcccattcttaacgaggccggcttcgaggacttactagctcatggcgcgccggcc
ggcgaagacgcggacggatag
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