Corynebacterium coyleae: CCOY_05575
Help
Entry
CCOY_05575 CDS
T09177
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccoy
Corynebacterium coyleae
Pathway
ccoy03030
DNA replication
ccoy03410
Base excision repair
ccoy03420
Nucleotide excision repair
ccoy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCOY_05575 (ligA)
03410 Base excision repair
CCOY_05575 (ligA)
03420 Nucleotide excision repair
CCOY_05575 (ligA)
03430 Mismatch repair
CCOY_05575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoy03032
]
CCOY_05575 (ligA)
03400 DNA repair and recombination proteins [BR:
ccoy03400
]
CCOY_05575 (ligA)
Enzymes [BR:
ccoy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCOY_05575 (ligA)
DNA replication proteins [BR:
ccoy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCOY_05575 (ligA)
DNA repair and recombination proteins [BR:
ccoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCOY_05575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCOY_05575 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCOY_05575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCOY_05575 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
DUF8512
Motif
Other DBs
NCBI-ProteinID:
WJY79724
LinkDB
All DBs
Position
1135208..1137235
Genome browser
AA seq
675 aa
AA seq
DB search
MSEISADLHREWDELAAEVRKHRDLYYNGQPVITDAEFDEMFRRLQKMEEDHPELAVPDS
PTKQVGAPTADSAFADVTHPERMMSLDNVFSEEEMREWLDKTPGPYLAELKIDGLSIDLI
YENGELTRAATRGDGTTGEDITANARVIEDIPHKLTGDAPAFLEVRGEVFIRPEDFPELN
ELRQKEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFTPETQHEAYEKL
AEWGLPVSEYTRRAETADDVLKAVKYWGEHRNDAIHEMDGLVVKVDSVAEQRGLGATSRA
PRWAIAYKYPPQEVTTKLLDIEVSVGRTGRATPYAVLEPVFVSGSTVSMATLHNQHEVKR
KGVMIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVYPENCPSCGTKLAPAKEGDADWR
CPNTRSCPAQLATRLEYIASRGVFDIEALGEKGAVDLIASGVLEDEAKLFDLTEEDLKKS
SVYTRKDGEVNASGKKLLANLETARHADLWRVIVALSIRHVGPTAARALASRFHSMQSLI
DAPVADLAETDGVGDVIAESFKEWFTVDWHQNIVDSWAAAGVTMESDDQDRAPQTLEGLT
IVATGTLEGFTRDEIKEAILSRGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGRPILTE
AQFVQLLEGGPDALA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaatttccgctgatctgcaccgtgaatgggacgaactagccgccgaggtccgt
aagcaccgcgacctgtattacaacggccagccggtaattaccgacgctgagttcgacgag
atgttccgccgcctccagaagatggaggaggatcacccggagttggcggtgccggattcg
ccaacgaagcaggtcggcgcgccgacggccgattccgcgttcgcggacgtaacacacccc
gagcgcatgatgagcctggataacgtgttctccgaagaggagatgcgcgagtggctggac
aagaccccggggccgtacctggcggagttgaagatcgacgggctgtccatcgacctgatc
tacgaaaacggggaactgacccgcgcagcaacgcgtggcgacggcactaccggcgaggac
atcaccgccaacgcgcgcgtcatcgaggacatcccgcacaaactcactggcgacgcaccc
gcgttcctcgaggtccgcggcgaggtattcatccgccctgaggacttcccggaactcaat
gagttgcgccaaaaggaaggcggcaaaccgttcgccaacccccgcaacacggcagccggc
ggcctacgccagaagaatccggaggacgtgaagaagcgcaaactgcgcatgatctgccac
ggcatcggcgcacgcgagggctttacccccgagacccagcatgaggcgtacgagaaactc
gccgagtggggcctgccggtctctgagtacacgcgccgggctgagactgcggacgatgtg
ctcaaggccgtgaagtactggggtgagcaccgcaatgatgcgatccacgagatggacggg
cttgtggtcaaggtggattccgtcgctgaacagcgcgggcttggcgcgacgtcgcgcgcg
ccgcgttgggcgattgcctacaagtatccgccgcaggaggtgaccacgaaactgctcgac
attgaggtctctgtcggtcgtacgggccgcgcgacgccgtatgcggtgctggagccggtg
ttcgtctcaggctcgacggtgtctatggcaaccctgcacaaccagcatgaagtcaagcgc
aagggcgtgatgatcggcgacaccgtggtggtgcgcaaggccggcgagattatccccgag
gtgctgggccccgttgcagatcttcgcgacggcaccgagcgcgaattcgtctaccccgag
aactgcccctcgtgcggcacgaaacttgctcccgcgaaggagggcgacgcggactggcgc
tgcccgaatacccgctcgtgccccgcacagctcgccacccgcctggagtacatcgcatca
cgcggcgtattcgatatcgaggcactcggcgagaagggcgcggtcgacctcattgcctcc
ggggtgctggaggacgaagcgaagctgttcgacctcaccgaggaggacctgaaaaagtcc
agcgtgtacacccgcaaggacggcgaggtcaacgcctccggcaagaagctcctggccaac
ctggaaaccgcgcggcacgccgacctgtggcgcgtgatcgtggcgctatccatccgccat
gtcggccccaccgcggctcgcgcgctcgcgtcgcgcttccactcgatgcaatcgcttatc
gacgcccccgtggccgacctcgccgaaaccgacggcgtgggcgacgtgatcgccgagagc
ttcaaagagtggttcaccgtggactggcaccaaaacatcgtggacagctgggccgcagcc
ggcgtgactatggagtcggacgatcaggaccgcgccccgcagacgctggaggggctgacc
atcgtcgccaccggcacgctggagggcttcacccgagatgaaattaaggaagccatcctg
tcccgcggaggcaaggcggcgggttcggtgtcgaagaaaaccgactatgtggtcgtcggt
gaaaacgccggctccaaggcagcgaaagccgaagagctgggccggccgatcctcaccgag
gcgcagtttgtgcagctgctcgagggcggccccgacgcgcttgcgtaa
DBGET
integrated database retrieval system
