KEGG   PATHWAY: ccp00195
Entry
ccp00195                    Pathway                                
Name
Photosynthesis - Chondrus crispus (carragheen)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
ccp00195  Photosynthesis
ccp00195

Module
ccp_M00161  Photosystem II [PATH:ccp00195]
Organism
Chondrus crispus (carragheen) [GN:ccp]
Gene
CHC_1075  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
CHC_1150  psaI; photosystem I subunit VIII [KO:K02696]
CHC_1155  psbJ; photosystem II protein J [KO:K02711]
CHC_1160  psbL; photosystem II protein L [KO:K02713]
CHC_1165  psbF; cytochrome b559 b subunit [KO:K02708]
CHC_1170  psbE; photosystem II PsbE protein [KO:K02707]
CHC_1195  psaM; photosystem I subunit XII [KO:K02700]
CHC_125  psbA; photosystem II D1 core protein [KO:K02703] [EC:1.10.3.9]
CHC_205  psbD; photosystem II D2 core protein [KO:K02706] [EC:1.10.3.9]
CHC_210  psbC; photosystem II CP43 protein [KO:K02705]
CHC_25  psaF; photosystem I subunit III [KO:K02694]
CHC_265  psb28; photosystem II 13kD protein [KO:K08903]
CHC_30  psaJ; photosystem I subunit IX [KO:K02697]
CHC_305  petB; cytochrome b6 [KO:K02635]
CHC_310  petD; Cytochrome b6-f complex subunit IV [KO:K02637]
CHC_425  psbH; photosystem II reaction center protein H [KO:K02709]
CHC_435  psbT; photosystem II reaction center protein T [KO:K02718]
CHC_440  psbB; photosystem II CP47 protein [KO:K02704]
CHC_450  petF; ferredoxin (2Fe-2S) [KO:K02639]
CHC_60  psbV; cytochrome c550 [KO:K02720]
CHC_610  psbZ; photosystem II protein Z [KO:K02724]
CHC_620  petG; cytochrome b6/f complex subunit V [KO:K02640]
CHC_630  psaB; photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
CHC_635  psaA; photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
CHC_65  petJ; cytochrome c553 [KO:K08906]
CHC_665  psaD; photosystem I subunit II [KO:K02692]
CHC_735  petA; cytochrome f [KO:K02634]
CHC_765  atpB; ATP synthase CF1 beta chain [KO:K02112] [EC:7.1.2.2 7.2.2.1]
CHC_820  atpI; ATP synthase CFO A chain subunit IV [KO:K02108]
CHC_825  atpH; ATP synthase CFO C chain, lipid-binding subunit III [KO:K02110]
CHC_830  atpG; ATP synthase CFO B' chain subunit II [KO:K02109]
CHC_835  atpF; ATP synthase CFO B chain subunit I [KO:K02109]
CHC_840  atpD; ATP synthase delta chain [KO:K02113]
CHC_845  atpA; ATP synthase CF1 alpha chain [KO:K02111] [EC:7.1.2.2 7.2.2.1]
CHC_880  psbI; photosystem II protein I [KO:K02710]
CHC_925  psaL; photosystem I subunit XI [KO:K02699]
CHC_T00001103001  [KO:K08901]
CHC_T00001382001  [KO:K14332]
CHC_T00004568001  [KO:K02115]
CHC_T00006428001  [KO:K02639]
CHC_T00007954001  [KO:K02636] [EC:7.1.1.6]
CHC_T00008339001  [KO:K02716]
CHC_T00008519001  [KO:K02641] [EC:1.18.1.2]
CHC_T00008719001  [KO:K02115]
CHC_T00009123001  [KO:K02719]
CHC_T00009374001  [KO:K02639]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
ccp00196  Photosynthesis - antenna proteins
ccp00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   

DBGET integrated database retrieval system