Chondrus crispus (carragheen): CHC_T00009253001
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Entry
CHC_T00009253001 CDS
T02916
Name
(RefSeq) Elongation factor Tu GTP-binding domain-containing protein 2
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00009253001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00009253001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CHC_T00009253001
Complex C
U5 SnRNP specific factors
CHC_T00009253001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EF-G_D2
MMR_HSR1
Septin
Motif
Other DBs
NCBI-GeneID:
17317952
NCBI-ProteinID:
XP_005710237
UniProt:
R7QQB1
LinkDB
All DBs
AA seq
1025 aa
AA seq
DB search
MDVEELYDEFGNYIGPEESESDSGSLQLPERHSEPTTTAGVQADTSSPVKAPGTGLERLN
QNSTGGGENGDSNAIVLAEDKQYYPSAEEVFGPDTEVLIEEEDAQPISEPIIAPIVEPSS
GLHESKESIPPAKYSRAYLTNAVLPNCSRVRNIAVVGHLHHGKTAFADMLFEATHEMPWG
KLDDRSLPVRYMDTRRDEQSLAISIKTTLSTFLLQNFKEKSYAFNVVDTPGHVNFLDEAI
AGMTMVDGVVVVVDVAEGIMMGAEILMKKAAVLKLDIVLIISKLDRLPLELRLPPAHAYH
KIRHIIDCANDIIEPYGLPELSPAAGNVAFASSVERVCFTLEQYAQTYIAANGGSSRFPL
LPSQLATRFWGDKYYDKGKRRFTDKNPGGDVRRSFVEFVLEPFYKLHTAVVSSDADDLAD
FLNRNSLIGDEKGFATGKCLGSARNKRLDVNKKPLLKSIVGSAFGWGNMAGFVEMVTQHI
SSPEQTGIRKIDVMSRSADLDMGEATVGKKDWVGAIEDCLSSPSAPLTAYVGKLVPDEKG
HHFDCMLRVLSGTLRVGQKVRVLGDTYDKTENAEDQAVAVVTAVFISCARFKIEVNDAKA
GQLVLVRGIDQTVFTSATVVSASDSECQEAYALRSLRDFLPAASTKVAIEPLRPSDLPKM
VASLQQCVKSFPGLVSKVEESGEHTIVGSGELYLDCALRDLREAYGKVDIKISDPVVPFA
ETVTEMSALQCYGKTPNKHNKLVMVAEPLESSILDGLESGKLEKSGNSSMLLRELGWDAL
AARSLWTFGPDIARGPNALLNDVLIQETRRESDDVRESIVRGFCWAMQEGPLTDEPVRGV
KMRLLDASIASREFLRSPAQIIPTCRRVAYSSILTANPRLMEPVYRTEIICGSAALSAAY
MLVGRRRGVVLEESEVAGAPLMRLMVDMPVLDSFGFETDLRVLTQGGAFCMQVFDHWGVV
PGDPLDKTVELRPLEPSGRRELARECMLKTRRRKGMGDEVSLTKYFDDPLLAELAKDNEE
LRQLL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgaggagttgtacgacgagtttgggaactacattggcccagaggaatcagaa
tcggatagcgggtcgcttcagttacccgagcgtcactcggaaccaaccaccactgcaggt
gtccaagcggataccagcagcccagtgaaggcacctggcacaggcctagaacgtttgaat
caaaattccacaggtgggggagagaatggcgattctaacgcgattgtactggcggaggac
aagcagtactacccatctgccgaggaagttttcggtccggacactgaagttctaatcgaa
gaggaagacgcgcagcccatttcagagccgatcatagccccgatagttgaaccgtcatcg
ggattgcacgaaagcaaagaatctatcccaccggcaaagtacagtcgagcctacctcaca
aatgcagtgctcccaaattgcagccgagtacgaaatattgccgttgttgggcatttgcat
catggaaagacagcgttcgcagacatgctgtttgaggccacacatgaaatgccatggggg
aaactggatgaccgcagcctaccagtgcgctatatggatacaagaagagatgaacagtcg
cttgctatctcaatcaaaaccacattgtctacttttctgcttcagaacttcaaggagaag
tcatatgcatttaacgtcgtagatacaccggggcatgtgaattttttggacgaagccatt
gccggcatgacaatggttgatggagttgtagtcgtagttgatgttgcggaaggtatcatg
atgggtgccgaaattttgatgaagaaagcagctgttttgaagcttgacatcgttctcata
atatcgaaactcgatcgcctccctcttgaacttcgacttcctccagcccacgcgtaccac
aagattcgtcatataatcgactgtgcaaatgatatcatcgaaccgtatgggcttcccgaa
ttgtcacccgctgctgggaacgtggcttttgcttcgtcggtggagcgcgtttgtttcaca
ttggaacagtatgctcagacatacatagctgctaatggtggctcttcccggtttccgctt
ttgccatcacagttagcaacgcggttctggggcgataagtattatgataagggcaagcga
aggtttacggacaaaaacccgggaggtgacgtgaggcgaagtttcgttgagtttgttctg
gaaccattttacaagctccacactgctgttgtgtcgtcagacgctgacgatcttgcagat
tttctaaatcgcaattcgttaattggggacgaaaaggggtttgccactgggaaatgcctc
ggttcagctcgaaacaaacggctagatgtgaataagaaaccactacttaagtcaatagtt
ggcagtgcgtttggctggggaaatatggctgggtttgttgaaatggttactcagcacatc
agttcaccagagcagactgggattcgcaagatagacgtcatgagtcgcagtgcggatttg
gacatgggtgaggcaactgtcggaaagaaggattgggtcggcgcaatagaggactgcctt
tcgtcaccatcagctcctctgacagcttatgtgggaaagctagtacccgatgagaaagga
caccattttgactgcatgctgcgtgttttgagtgggactctgcgagtcggacagaaggtg
cgggtgctcggagacacctacgataaaaccgagaacgcggaagaccaagcagttgcagtt
gtcaccgccgtgttcatctcttgtgcacggttcaagattgaagttaatgatgcaaaagct
gggcaattggtccttgtacgaggtattgaccaaactgtcttcacatcggcaacagttgtc
tctgcaagcgattcagagtgtcaagaggcatatgcattacgatcgttacgagactttctt
ccggcggcttccacaaaagttgcgatagaacctttgcgtccctcagatctaccgaaaatg
gtggcctcgcttcaacagtgcgtgaaatcattcccaggtttagtatccaaggtcgaggaa
agtggggaacataccatagttgggtccggggaactttatctggattgtgcgttacgtgat
ctacgggaagcatacggaaaggtggacatcaaaatttcggaccccgtcgtaccgtttgct
gagacagtgactgagatgtcggcccttcaatgctacggaaagacgcccaacaagcacaac
aagctagtcatggtagcagagccccttgaaagcagcatcctcgatggactggaatctggg
aagcttgagaagagcgggaattcgtcaatgctattacgagagttgggctgggacgcactt
gcggctcggtccctgtggacgtttggtccagatatagcgcgcggtccgaatgcgttgcta
aatgatgttttgatccaggagacgcgaagggagtctgacgacgtgcgagaatcgatcgta
cggggtttttgctgggcgatgcaagagggtccgctaacagatgaaccggtgcgtggcgtg
aagatgagactgctagacgccagcattgcgagccgggagtttttacggtctccagcacag
atcatcccgacgtgccggcgagtggcatattcgtcgattctaacagcgaacccgcgtctg
atggagcccgtgtatagaacagagattatctgtgggagtgcggcgctgtcagctgcgtat
atgctggttgggcggcgacgaggggtggtgctagaagagagcgaggtggccggtgcaccg
ctgatgcgactgatggttgacatgcccgtgttggattcttttgggtttgagacggacctg
cgggtgctgacgcaaggcggggcattctgcatgcaggtgtttgatcattggggcgtcgtg
cctggggatccgctcgacaagacagttgagctgcgtccgcttgagccatccgggagaaga
gagctggcgcgcgaatgcatgctgaagacacggaggcgcaaggggatgggtgatgaggtg
tcacttactaaatattttgacgatcctttgctggcagagctggccaaggacaacgaggaa
ctgcggcaactgttgtga
DBGET
integrated database retrieval system
