Chondrus crispus (carragheen): CHC_T00009388001
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Entry
CHC_T00009388001 CDS
T02916
Name
(RefSeq) isoleucine--tRNA ligase, cytoplasmic
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
CHC_T00009388001
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ccp01007
]
CHC_T00009388001
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00009388001
Enzymes [BR:
ccp01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
CHC_T00009388001
Amino acid related enzymes [BR:
ccp01007
]
Aminoacyl-tRNA synthetase
Class I (U)
CHC_T00009388001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
CHC_T00009388001
Prokaryotic type
Other AARSs
CHC_T00009388001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
DUF5915
Anticodon_1
tRNA-synt_1g
tRNA-synt_1e
HVO_A0114
Motif
Other DBs
NCBI-GeneID:
17322626
NCBI-ProteinID:
XP_005714910
UniProt:
R7QCF2
LinkDB
All DBs
AA seq
1162 aa
AA seq
DB search
MSTPGEVPERISFPSTEEGVLSHWKDIDAFHTANKLSEGRPVFSFYDGPPFATGLPHYGH
LLAGTIKDTVTRFAYQTGHHVPRRFGWDCHGLPIEFEIEKMLGIKSRDDVLKLGIDKYNA
ECRKIVMRYSKEWETVVTRLGRWIDFENDYKTLDTSFMETVWWVFKSLHAKGLVYRGFRV
MPYSTACTTPLSNFEAGLNYKDVDDPAVVVSFPIIDAEEPASFLAWTTTPWTLPSNLALC
VRDDLDYVYVADHKSGNTYVLAESRLVQLYKNPKKKKGFEILRKVKGKELVGLKYQPLFD
YFKNEYGERAFRVLSDEYVTDADGTGIVHQAPAFGEDDYRVCTTNGIVDLGEDLPCPVDD
DGKFVDPVVDFAGLHVKEADKKIIVELKERGRLVKNDSLNHRYPFCWRSDTPLIQRAVPS
WFVNVTAIKDKLVANNKETYWVPGFVQHNRFGSWLENARDWNVSRNRYWGTPLPVWTNDE
TGEFIVIGSVKELEELSGRTGITDLHRDSVDDIEIKSPKTGAALKRTSEVFDCWFESGSM
PYSSVHYPFEKDSEEQFKHSFPAPSIGWQPHEYRCWFYTLMVLSTALFDKPAFKNCVVNG
LVLAEDGKKMSKRLKNYPDPVHVLSNYGADALRLYLVNSPVVRAEPLRFKEEGVRNVIKD
VMLPWFNSLRFLTQNVRALDKSSGVPLKIADASKHEKHKNQMDVWIESALGSLTAAVHEE
MSAYRLYTVVPKLLSFVNSLTDWYVRLNRPRLKGMGTEEEQRAALGTLAHVLLTLAQLMA
PFAPFFAEYTYQILKPVAPEELQSGSVHFLMLPEVDTSHVDKPFEAAIEHMKAAIVLGRV
GREHKEIALKQPLKEATVIHRDTSVIESVRSLEMYVRSELNVRTVKYSSDESEYVMLKAD
ADGRVLGRKLGKDFKTVHKAVRALKPEEVLKLESQGELEVAGHILTSSDVKISRELKEEF
KTCGDLQVETSSNGLLVVLNMVRDEDLVNEGTAKEMINRIQKLRKKVNLRPEDKIEIFID
TEDASLLSVMSSKESVFRDVLNGCIPLVISEKAEEAVEIAYESVEAIGEAELKVCLTKAS
VAPSTARIQELVSGNQRAAQAISAYLRCRDLKCLNVEKKEDGMLESVDVAVTVDGEVRCC
SVRIGKELFLCTADRVAAGAPL
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacccggcgaggtccccgagcgtattagcttcccctccacagaggagggcgtg
ctttcgcactggaaggacatcgacgctttccacacagccaacaaactcagcgagggccgc
cccgtcttctcgttctatgacggccctcccttcgccaccggccttccccattacggccat
ctcctcgcaggcacaatcaaagacaccgtcacccgcttcgcctaccaaacaggccatcat
gtgccccgtcgcttcggctgggattgccacggcctgcctatcgagtttgagatcgagaaa
atgctcggcatcaaatcgagggacgatgtcctcaagttaggcatcgacaagtacaatgca
gagtgcaggaagatcgttatgcgctactcaaaagaatgggaaactgtggtcaccaggctc
ggccgttggatcgattttgaaaatgactacaagactcttgacacctccttcatggagacg
gtgtggtgggttttcaagtccctgcatgcaaaagggctcgtctatcgcggcttcagagtg
atgccgtactccaccgcctgcacaaccccgctctccaacttcgaggcaggtttgaactac
aaggacgtcgacgatccggctgttgtcgtttcctttcccatcatcgacgccgaggagcct
gcgtctttcctcgcgtggaccaccaccccatggactcttccatccaatctcgctctttgc
gtcagggatgatttggactacgtgtatgtggccgaccataagtcgggcaatacatatgtg
ctggcagagtctcgtctagtccaactgtacaaaaacccaaaaaagaagaagggatttgag
atcttgagaaaggttaagggtaaggagttggtgggtctcaagtatcaaccgcttttcgac
tatttcaagaacgagtacggtgagcgcgcgttcagggtgctctcggatgagtacgtcact
gacgcggatggtactggtattgtgcatcaggcgccagcgtttggagaggatgattaccgc
gtgtgcaccacgaatggcatcgtggatcttggcgaggacttgccgtgtcccgtggacgac
gatggcaagtttgtggaccccgttgtcgacttcgcggggttgcacgtgaaggaagccgac
aagaagatcattgtggaattgaaggagaggggccgccttgtgaagaatgactctctcaac
catcgctaccccttctgctggcgttccgatacgccactcatccagcgtgcagtgccgtct
tggttcgtcaacgtcacggcaatcaaggacaaacttgtcgccaacaataaggaaacttat
tgggtgccgggcttcgtccagcacaatcgcttcggcagctggctggagaatgcccgagac
tggaatgtatccagaaacaggtactggggcaccccgctccctgtgtggaccaatgacgaa
actggtgaattcattgtcatcggttctgtgaaggaattggaggaactgtcgggacgcacg
ggcattaccgaccttcatcgcgattccgtcgatgatattgagatcaaatcaccgaagacg
ggggcggccttgaaacgaacctctgaggtatttgactgctggtttgaaagtggctccatg
ccatactcatctgttcactatccatttgagaaagacagcgaagagcagttcaaacactcg
ttccccgcaccatcaatcggttggcaaccacatgaatatcgttgctggttttacactttg
atggtgctgtcgacggcgctttttgacaagcctgctttcaagaactgcgtcgtcaacggc
cttgtccttgctgaagacggtaagaaaatgtcgaagcgattgaagaattatccagatcct
gtgcatgttctaagcaactacggtgctgatgcgctgaggctgtatttggtcaactcaccg
gtcgtgcgggcggaacccttgcggttcaaggaagaaggggtgcgtaacgtcatcaaagat
gtcatgctgccctggttcaattctttgcgattcctcacccaaaacgtccgagcactggac
aagtcatctggggtgccactcaaaatagctgatgcgtcaaagcatgaaaagcataagaat
caaatggacgtgtggattgaatcggctctaggttcactgacggctgccgttcacgaggag
atgagtgcataccgtctctacaccgtggtccccaagcttctgagctttgttaattcgttg
acagattggtatgtccgccttaacaggccgcgtttgaagggaatggggacggaggaagaa
caaagagcggctctaggaacactggctcatgttcttctgaccttggcacagctcatggca
ccatttgctcctttcttcgctgaatacacataccagattttgaagcctgtagctcctgag
gagctccagtccggttctgttcactttctgatgctacctgaggtagatacgagtcatgtg
gacaagccatttgaagcggctatcgaacacatgaaggctgcaatcgtgcttggacgcgtc
ggtcgtgagcacaaagaaattgctttgaaacaaccactgaaagaagcaaccgttattcac
agggatacgagcgttattgagtctgttagatctctggagatgtacgttcgttccgaacta
aatgtgcggacggtcaagtactcgtccgatgaatctgaatacgtgatgctgaaagctgac
gctgatggtcgtgttttgggacgaaaactcggcaaggacttcaagacagtgcacaaagct
gtgcgagcattgaaaccggaggaggtccttaagttggagtcgcagggtgagctggaagtg
gctgggcatattttgacaagcagcgatgtgaagatcagtagggagctaaaggaagaattc
aagacctgtggtgacttacaagtagaaacatcttctaatgggctgcttgtcgtcctcaat
atggtgcgcgatgaggacctggtgaatgaaggtacggcgaaggaaatgatcaaccgaatt
caaaagcttcgaaagaaggtgaatctgagaccagaggacaagattgaaatatttattgat
actgaggatgcctcgttactatctgttatgtccagcaaggaaagtgtattccgggatgtg
ctgaacggctgtattcctctagtgatttccgaaaaggcggaagaagcggtggagattgct
tatgaaagcgtagaagcgattggtgaagccgagctgaaggtttgcctgaccaaggcgtca
gttgcgcccagcaccgcgcggatccaggagcttgtgagtgggaatcaaagagcagcgcaa
gctatttcggcgtatctgcggtgtcgggatctgaagtgcctcaacgtggagaagaaggag
gatggtatgcttgagagtgtggatgtggcagtgacagtggatggggaggtgaggtgctgc
tctgtacggataggcaaggaattgttcttgtgcaccgcggatcgcgtagctgccggagct
cctttgtga
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