Chrysoperla carnea: 123296956
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Entry
123296956 CDS
T09255
Name
(RefSeq) uncharacterized protein LOC123296956
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123296956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrn03019
]
123296956
03032 DNA replication proteins [BR:
ccrn03032
]
123296956
Messenger RNA biogenesis [BR:
ccrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123296956
mRNA cycle factors
Common to processing body (P body) and stress granule
123296956
DNA replication proteins [BR:
ccrn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
123296956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
EST1-like_DNA_bind
Motif
Other DBs
NCBI-GeneID:
123296956
NCBI-ProteinID:
XP_044734625
LinkDB
All DBs
Position
3:33854576..33962810
Genome browser
AA seq
1652 aa
AA seq
DB search
MSRSKPELQLYRPGSGRLRKSVQESECENKLDSGSNLNLNVYNRQYDNTNKFDLISSNIN
ELSLSQSYREELGSTCSLTSDYKRSNRHKKFDRVLYDPKRVIDKEKSSGVLNHHHQSNNM
QLGGGHRSDSGRNQYDQSRNRGRDNKNSGGRSNNDGYNDNSNTSNKHSHRRGHGNRNRYD
HDGNDRRGNNEESWRSYSPHRRDYRQASEPRIMGVPSDVNRVRDTRSVEPMGPPRWNQDK
MHSKPPSGRRNSTISMGSDGMIQQKPSKPPPNFDSLPPRFKNKFLKNNGFHNVNKSSEEP
WDGSSVTFQGSGNGNYQQSNSRVGSPHQKPQIVQQPMLGGGGNQMRGGYIPPQSWSQTLP
NMRGRGRGRLRQDDLDMDRLCQQLSRTGTEKINMMNHQVQPRPMTPPQYSNVIRTPSNES
LTRCQQSPSKDYSLKVDRMYRGLHTPPPHVTTPPGQFRRNSIPVESQQVHTPRAPSPNVS
QQQQQPQQQQQQQQPQQQQPSPSSKTPPEILDWSEEVEMYAEIEEGLSDAAITRSSSMNS
LVDHSCNTHPPRDKKNRRRRNRRKGDGRNRPNRDNRDRSIDNGTRNQSQNSNRSNYSHNR
SGYRSRDNSASRETFKVPEFRGDSQSRGGNQNRNNNEGHRHRRRRDSRDSSGERSRRNSF
KESDNRNWRDEIRDRRPQEKETAEPIKTSSCQAPGILVLPRGDTTATDSPRPQNLPISNR
HSSHNVQQANPVVSSQQKQLFDHHNPDKPIVVQATSSRISIPDPTRLSASDSSSSININN
QGPNCVTDQFGNIRPPWYDPERSRTTTSKIHVDTEIADLQLQWLLNSGDICRDWDRAMAI
RQFLQESLVTWLRTEIKFCQTENVENYFWRILYYNIIEVLRKEDRPDHKEQSRQYLKQII
DEGTKYFENVLRELEKSYSFKVEDFLGSKSYPQPKGLGYVGLALVSAQKVYICLGDLARY
KEQMNDQPSYGISRQYYLHAQQLNPKNGRPYYLLAVLANNARRKLDAVYYYMRSLMTSNP
FQSAKESLTSLFDDIRKKYEQTERKRREEKAERAKLHMKERERNVPGGNSLRREIWIHPE
GGRRVHRTTSAQAGVLLDSDEEDISKLTSSEINKRFNISYLHVLGKLITKIGMETFQDAA
LQMLKEFRALLQHSPFPLISTRLLQLLALNMYAIESSKLKEPQIEPRCRSEVQECALVVS
LQMFNIIVERCVSLLREQLDNTDHPLPRIVGDDLQVILPAIKVWCDWMLCNMSIWNPPPS
CSDYKIGSQGDTWSRLAVLMNLLEKLDYEQLELVSAPEDGNEMIRLPEDAMLSGFTPLMW
NPLEIRYVNKDADMEVAQICWRINRIYFFGSEILCGITPPVLKLHKFDTGRSEYISVVRA
SQKGEENSYAQDLSSDSDILVESFSEDEDSDEPKIDVISAGITDATDDEIRGLLQRKEEL
KKRQLTQERHRARVQAILQQSVVSVEIEVKPRLLVPDTNCFIDYLTSLKTITEAQISAQP
VYILSVPLVVFNELEGLARGGKTPTPSTRTSIDPAHIAKVAEAAKYALEFLRSRNAAVRC
YTSKGAVVPLYTHTLEEDFDQDVGVRNDDRILATSLSLCRGSNKDQHNEGEPRRLYREVV
LLTDDRNLRVKALARDVPVRELPDFMKWAGLG
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggtcgaaacccgaactacaattatatcgtcctggtagtggtcgacttcgaaaa
tctgttcaggaatcggaatgtgaaaataaacttgattcgggtagcaatttaaatcttaat
gtgtacaatagacaatatgataatactaacaaatttgatttaataagcagtaatattaat
gaactcagtttgtcacagtcttatcgagaagagttgggatctacgtgtagtttgacgagt
gattataaacgtagcaacaggcataagaagtttgaccgagtgttgtatgatccaaagcgg
gttattgataaagaaaaatcatcaggtgttttaaatcatcatcatcaaagtaacaatatg
caactgggaggcggtcatcgttcagactctggtagaaatcaatatgatcaatcacgaaat
cgcgggcgggataataaaaatagtgggggtaggagtaataatgatggatataatgataat
agtaacacatcgaataaacattcacataggagaggtcacggtaatcgaaatcgctatgat
catgatggtaatgatagacgagggaataatgaagaaagttggagatcatattcaccacat
cgacgggattatcgacaggcatctgaaccaagaataatgggtgtaccatcggatgtcaat
cgtgtacgagatactcgtagcgtcgaaccaatgggtccaccacgttggaatcaagataaa
atgcattcaaaaccgccatctggtcgaagaaatagtacaatatcaatgggatcagatggt
atgattcaacagaaaccatcaaaacctccaccaaatttcgattcattaccaccacgattt
aaaaataaatttttaaaaaataatggatttcacaatgttaataaaagttctgaagaacca
tgggatggatctagcgtgacttttcaaggttcgggaaatgggaattatcaacaatcaaat
tcgcgtgttgggagtccacatcaaaaaccacaaatagtacagcaacctatgcttggaggt
ggtggcaatcaaatgcgtggtggttatataccacctcaatcttggtcacaaactttacca
aacatgcgtggtagaggacgcggacgacttagacaagatgatttagacatggatcgatta
tgtcaacaactcagccgaacaggtacggaaaaaattaatatgatgaaccatcaagttcag
cctcggcctatgacacccccacaatactcaaatgtaatacgcacaccgagtaatgaaagt
ttaacacgttgccaacaaagcccaagtaaagattattccttaaaagtggatcgtatgtat
cgaggattacatacaccgccacctcatgttactacaccacctggtcaatttcgacgaaat
agtataccagtggaatcacaacaagttcatacacctagagcaccatcaccaaatgtttca
caacaacaacaacaaccacaacaacaacaacagcaacaacaaccacaacaacaacagcca
tcaccgtcatcgaaaacaccaccggaaattcttgattggagcgaagaagttgaaatgtat
gctgaaattgaggaaggtttaagcgatgctgcgattacgagaagttcatcgatgaatagt
ttagtggatcattcatgtaatacacatccgccacgggataagaagaatcgcaggagaaga
aatcgtaggaaaggggatggacgaaatcgtccgaatagagacaaccgtgatcgaagtatt
gataatggaacgcgaaatcaatcacagaattccaatagaagcaactactcacataatcga
tctggatatcgttcgcgggataatagcgcatctcgtgaaacttttaaagtgccagaattt
cgtggtgattcacaatcaagagggggtaatcaaaatagaaacaataatgaaggacataga
catcgacgacgacgcgatagtcgtgattcaagtggtgaacgaagccgacgcaattcattt
aaagaatcagacaatagaaattggcgtgatgaaattcgtgatcgacggccgcaagaaaaa
gaaactgctgaaccaataaaaacttcatcatgtcaagcgccaggtattttggtattacct
agaggagacactactgctacagatagcccacggccgcaaaatcttcccatttctaatcgg
cattcatctcataatgtacaacaagcgaatccagttgtatcgtcacaacagaaacaactt
ttcgaccatcataatcccgataagccaattgtggttcaagcaacgagtagtcgaatatca
attccagacccaacacgcttatccgcaagtgattcgtcatcttcgataaacataaacaat
caggggccaaactgtgtaacggatcagtttggtaatattcgaccaccatggtatgatcca
gaacgatcacgtacaacaacgtcgaaaatacacgtagatacagaaattgctgatctgcag
ttacaatggctactaaattctggtgatatttgtcgtgattgggatcgagcaatggcaatt
cgacaatttttacaagaaagtttagtcacatggctacgtaccgagattaaattttgtcaa
acagagaacgttgagaactatttttggcgtattttatattataacattattgaagtatta
cgaaaagaagatagaccagatcataaagaacaaagtcgacaatatctaaaacaaatcatt
gatgaaggtacaaaatattttgaaaatgtactcagagaattagaaaagagttattcattt
aaagttgaagattttttgggtagtaagagttatccacaaccgaaaggtttaggatatgtg
ggattggctttggtgtctgcacaaaaggtttatatttgtcttggtgatttagctcgatat
aaagaacaaatgaatgatcaacctagttatggaatatctaggcagtattatttacatgct
caacagctaaatcctaaaaatggtcgtccatattacttattagctgttttagctaataat
gctcggagaaaattagacgctgtctattactacatgagaagcttaatgacatcaaatcct
ttccagtcagctaaagaaagtttaactagtttatttgatgacattcggaaaaagtacgaa
caaacagaacgtaaaagacgtgaagaaaaagccgaacgtgctaaattgcacatgaaagaa
agagagagaaatgtaccaggtggtaattcattacgtcgcgaaatttggattcatcccgag
ggtggtagacgtgttcatagaacaacatctgctcaagctggtgttttgttagattcggat
gaagaagatatttcaaaacttaccagtagtgaaattaataaacgttttaacatcagttat
ttacacgtacttggcaaattaataacaaaaattggaatggaaacatttcaagatgctgcc
cttcaaatgttaaaagaatttagagcattattacaacactcaccatttccattaatatcg
acgcgtctacttcaacttctcgcattgaacatgtatgcaattgaaagttccaaattgaaa
gagccacaaattgagccacggtgccgatctgaagttcaagaatgtgcgttagttgtctca
ttgcaaatgtttaacataattgttgaacgctgtgtatcacttttaagagaacaacttgat
aacacagatcacccgttgccacgaattgttggcgatgatttacaagtcattttaccagca
ataaaggtttggtgtgattggatgttatgtaatatgtcaatatggaatcctccaccttca
tgttctgattataaaattggttcgcagggtgatacatggagtcgtttagctgtattaatg
aatctcctagagaaactagattatgaacagttggagttggtcagtgcgcccgaggacggt
aatgaaatgattcgcttaccagaagatgcaatgttaagtggatttacaccattaatgtgg
aatccattagaaatacgttatgtcaacaaagatgctgacatggaagtggcgcaaatatgt
tggcgaataaatcgtatatacttctttggatcagaaatattatgtggtataacgccacct
gtgttgaaattgcataaattcgacactgggcgtagtgaatatatttctgttgtacgagca
tcacaaaaaggcgaagaaaattcgtatgcacaagatttgtccagtgattcggatattctt
gtggaaagctttagtgaagatgaagattcagatgaaccaaaaatagatgtcatttcagct
ggtattacagacgcaaccgatgatgaaattcgtggacttttacaacggaaagaagaacta
aaaaaacgtcaattaacacaggaacgacatcgtgcacgagtacaagccattttacaacaa
tctgtggtgagtgttgaaatcgaagtgaaacctcgattactggtaccagacacaaattgc
ttcatcgactatttaacatcattgaaaacaattacagaagctcaaattagtgctcaacca
gtatacattttaagcgttccactagttgtttttaatgaattggaaggcctagcacgtggt
ggtaagactccaacaccatcaacacgaacatccatcgatccagcacatattgcaaaagta
gcagaagctgcaaaatatgctctcgaatttctgcgttcacggaatgcagcggtacgttgc
tacacatccaaaggcgctgtcgtaccattatatacccatacactggaggaagatttcgac
caagacgttggtgtacgaaatgatgatcgaatattggcgacatcattaagtttatgccgc
ggctcaaacaaagatcaacataacgaaggggaaccacgtcggttatatcgtgaagttgtt
ctgctcacagacgatcgtaatctccgtgtaaaagcattagctcgtgatgtaccagtcaga
gaattaccagatttcatgaaatgggcgggattgggatga
DBGET
integrated database retrieval system
