KEGG   Chondromyces crocatus: CMC5_039580
Entry
CMC5_039580       CDS       T04010                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ccro  Chondromyces crocatus
Pathway
ccro03030  DNA replication
ccro03410  Base excision repair
ccro03420  Nucleotide excision repair
ccro03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CMC5_039580
   03410 Base excision repair
    CMC5_039580
   03420 Nucleotide excision repair
    CMC5_039580
   03430 Mismatch repair
    CMC5_039580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccro03032]
    CMC5_039580
   03400 DNA repair and recombination proteins [BR:ccro03400]
    CMC5_039580
Enzymes [BR:ccro01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CMC5_039580
DNA replication proteins [BR:ccro03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CMC5_039580
DNA repair and recombination proteins [BR:ccro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CMC5_039580
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CMC5_039580
   MMR (mismatch excision repair)
    DNA ligase
     CMC5_039580
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CMC5_039580
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 PTCB-BRCT HHH_2 DNA_pol_lambd_f BRCT_2 DUF5405 HHH_3 HHH RNA_ligase
Other DBs
NCBI-ProteinID: AKT39807
UniProt: A0A0K1EGJ7
LinkDB
Position
complement(5288063..5290066)
AA seq 667 aa
MKQVDLFEAHAGKHTLQGGVETDAAHRERIDDLAQRVERHRALYYAGNPEISDAAYDAIE
DELRALSPTHPVLARVGSASLVTEWEKARHEIPMGSLNKVVNEDELRAWVARCEELLAKE
AHSPVERELFVAEKLDGISIEVLYKDGKLVDAITRGDGEWGERITANVARMKGVPARIRE
RGHLSVRGEIILRLSDMKRHFPGVTSPRNMAAGLSKRFDGQGAEHCTVLFYDVAEHAEIP
TCRKRFDWLRELGFGTPQAGHSTLDDVIELYRNYASGRRAALDYEIDGLVVYVDSLHVQT
LLGDLNRRPRGAVAFKFASPAKVSKVLSVLWDTGPSGRVTPVAIVEPVELAGAMVQRASL
HNAAHVRSLGIGVGDEVLVSRRNDVIPYVEEVVEKRGTSAQPPTTCSVCGASLVTEGEYI
LCRNNSCRALIEGRIHNWIDAIGALEWGDKLIEQLVAAGLVREPLDLYNLQVKDIAGLER
RGEKIAKKCLDQIKNRLPLTLPVFLTALGIEGFALQTARLLVSAGYGTLDKIRTAKEAEL
AVIPGLGTIKAANIVRGLAARKDEIDRLIAAGIEPVTLAAEGPLASLTFCFTGSGTRPRG
ELTQLVESNGGRVLGSVTKELNYLILADPSSASSKAEKARKYGTKLITEEQLEQLIEERR
NAAGNEG
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgaagcaggttgacctcttcgaggcccacgccggcaaacacacgcttcagggtggcgtc
gagaccgacgccgcgcaccgcgagcgcatcgacgatctcgcccagcgggtcgaacgtcac
cgggccctttactacgccggcaaccccgagatctccgacgccgcctacgacgccatcgag
gacgagctgcgcgcgctctcgccgacccacccggtcctcgcccgcgtcggctcggcctct
ctggtgaccgagtgggagaaggcacggcacgagatccccatgggatcgctcaacaaggtc
gtcaacgaagacgagcttcgcgcctgggtcgcgcgctgtgaagagctgctcgccaaggag
gctcattccccggtcgaacgcgagctgttcgtcgccgagaagctcgacggcatctccatc
gaggtcctctacaaggacggcaagctcgtcgacgccatcacccgtggcgacggtgagtgg
ggcgagcgcatcaccgccaacgtcgcgcggatgaagggcgtcccggcacgcatccgggag
cgcggccacctctcggtgcgcggcgagatcatcctccgcctgtcggacatgaagcgacac
ttccccggcgtcacgagcccccgcaacatggccgcgggcctctccaagcgcttcgatggc
cagggcgccgagcactgcaccgtgctcttctacgatgtcgccgagcacgccgagattccc
acctgccgcaagcgcttcgactggctgcgcgaactcgggttcggcacccctcaggcaggc
cacagcacgctcgacgacgtcatcgaactctaccgcaactacgccagcggacgccgcgcc
gccctcgactacgagatcgacggcctcgtcgtctacgtcgactctctccacgtgcagacc
ttgctcggggacctcaaccggagaccgcgcggagcggtcgccttcaagttcgcctccccc
gccaaggtctccaaggtgctctccgtcctctgggacacgggccccagcggccgcgtcacc
ccagtcgccatcgtggagcccgtcgaactcgccggcgcgatggtgcagcgcgcctcgctt
cacaatgccgcgcacgtgcgcagcctcggcatcggggtcggcgacgaagtcctcgtctcc
cgccgcaacgacgtcatcccctacgtcgaggaggtcgtcgagaagcggggcacctccgcg
cagccacccaccacctgcagcgtgtgcggggcatcgctcgtcaccgagggcgagtacatc
ctctgccggaacaacagctgccgcgccctcatcgagggcaggatccacaactggatcgat
gccatcggcgccctcgagtggggcgacaaactcatcgaacagctcgtggcagcgggcctc
gtccgcgagcccctcgacctctacaacctccaggtcaaggacatcgccggcctcgagcgc
cgcggcgagaagatcgccaagaagtgcctcgaccagatcaagaaccgcctgcccctcacg
ctcccggtcttcctgaccgcgctcggcatcgagggcttcgccttgcagacggcgcggctc
ctcgtctctgccgggtacggcacgctcgacaagatccgcacggccaaggaggccgaactc
gccgtcatcccgggactcggcaccatcaaggcggccaacatcgtgcgcggcctcgccgcc
cgaaaagacgagatcgatcgcctcatcgccgccgggatcgagcccgtcaccctcgccgcc
gagggccccctcgcgagcctcaccttctgcttcaccggctctggcacccgcccgcgcgga
gagctcacccagctcgtggagagcaacggcggccgcgtcctcggctcggtgacgaaggag
ctgaactacctcatcctcgccgaccccagctctgcctccagcaaggccgagaaggcgcgc
aaatacggcaccaagctcatcaccgaagagcagctcgagcagctcatcgaggagcggcgc
aacgccgccggcaacgaaggctga

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