Chondromyces crocatus: CMC5_039580
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Entry
CMC5_039580 CDS
T04010
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccro
Chondromyces crocatus
Pathway
ccro03030
DNA replication
ccro03410
Base excision repair
ccro03420
Nucleotide excision repair
ccro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMC5_039580
03410 Base excision repair
CMC5_039580
03420 Nucleotide excision repair
CMC5_039580
03430 Mismatch repair
CMC5_039580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccro03032
]
CMC5_039580
03400 DNA repair and recombination proteins [BR:
ccro03400
]
CMC5_039580
Enzymes [BR:
ccro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CMC5_039580
DNA replication proteins [BR:
ccro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CMC5_039580
DNA repair and recombination proteins [BR:
ccro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CMC5_039580
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMC5_039580
MMR (mismatch excision repair)
DNA ligase
CMC5_039580
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CMC5_039580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
DNA_pol_lambd_f
BRCT_2
DUF5405
HHH_3
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKT39807
UniProt:
A0A0K1EGJ7
LinkDB
All DBs
Position
complement(5288063..5290066)
Genome browser
AA seq
667 aa
AA seq
DB search
MKQVDLFEAHAGKHTLQGGVETDAAHRERIDDLAQRVERHRALYYAGNPEISDAAYDAIE
DELRALSPTHPVLARVGSASLVTEWEKARHEIPMGSLNKVVNEDELRAWVARCEELLAKE
AHSPVERELFVAEKLDGISIEVLYKDGKLVDAITRGDGEWGERITANVARMKGVPARIRE
RGHLSVRGEIILRLSDMKRHFPGVTSPRNMAAGLSKRFDGQGAEHCTVLFYDVAEHAEIP
TCRKRFDWLRELGFGTPQAGHSTLDDVIELYRNYASGRRAALDYEIDGLVVYVDSLHVQT
LLGDLNRRPRGAVAFKFASPAKVSKVLSVLWDTGPSGRVTPVAIVEPVELAGAMVQRASL
HNAAHVRSLGIGVGDEVLVSRRNDVIPYVEEVVEKRGTSAQPPTTCSVCGASLVTEGEYI
LCRNNSCRALIEGRIHNWIDAIGALEWGDKLIEQLVAAGLVREPLDLYNLQVKDIAGLER
RGEKIAKKCLDQIKNRLPLTLPVFLTALGIEGFALQTARLLVSAGYGTLDKIRTAKEAEL
AVIPGLGTIKAANIVRGLAARKDEIDRLIAAGIEPVTLAAEGPLASLTFCFTGSGTRPRG
ELTQLVESNGGRVLGSVTKELNYLILADPSSASSKAEKARKYGTKLITEEQLEQLIEERR
NAAGNEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggttgacctcttcgaggcccacgccggcaaacacacgcttcagggtggcgtc
gagaccgacgccgcgcaccgcgagcgcatcgacgatctcgcccagcgggtcgaacgtcac
cgggccctttactacgccggcaaccccgagatctccgacgccgcctacgacgccatcgag
gacgagctgcgcgcgctctcgccgacccacccggtcctcgcccgcgtcggctcggcctct
ctggtgaccgagtgggagaaggcacggcacgagatccccatgggatcgctcaacaaggtc
gtcaacgaagacgagcttcgcgcctgggtcgcgcgctgtgaagagctgctcgccaaggag
gctcattccccggtcgaacgcgagctgttcgtcgccgagaagctcgacggcatctccatc
gaggtcctctacaaggacggcaagctcgtcgacgccatcacccgtggcgacggtgagtgg
ggcgagcgcatcaccgccaacgtcgcgcggatgaagggcgtcccggcacgcatccgggag
cgcggccacctctcggtgcgcggcgagatcatcctccgcctgtcggacatgaagcgacac
ttccccggcgtcacgagcccccgcaacatggccgcgggcctctccaagcgcttcgatggc
cagggcgccgagcactgcaccgtgctcttctacgatgtcgccgagcacgccgagattccc
acctgccgcaagcgcttcgactggctgcgcgaactcgggttcggcacccctcaggcaggc
cacagcacgctcgacgacgtcatcgaactctaccgcaactacgccagcggacgccgcgcc
gccctcgactacgagatcgacggcctcgtcgtctacgtcgactctctccacgtgcagacc
ttgctcggggacctcaaccggagaccgcgcggagcggtcgccttcaagttcgcctccccc
gccaaggtctccaaggtgctctccgtcctctgggacacgggccccagcggccgcgtcacc
ccagtcgccatcgtggagcccgtcgaactcgccggcgcgatggtgcagcgcgcctcgctt
cacaatgccgcgcacgtgcgcagcctcggcatcggggtcggcgacgaagtcctcgtctcc
cgccgcaacgacgtcatcccctacgtcgaggaggtcgtcgagaagcggggcacctccgcg
cagccacccaccacctgcagcgtgtgcggggcatcgctcgtcaccgagggcgagtacatc
ctctgccggaacaacagctgccgcgccctcatcgagggcaggatccacaactggatcgat
gccatcggcgccctcgagtggggcgacaaactcatcgaacagctcgtggcagcgggcctc
gtccgcgagcccctcgacctctacaacctccaggtcaaggacatcgccggcctcgagcgc
cgcggcgagaagatcgccaagaagtgcctcgaccagatcaagaaccgcctgcccctcacg
ctcccggtcttcctgaccgcgctcggcatcgagggcttcgccttgcagacggcgcggctc
ctcgtctctgccgggtacggcacgctcgacaagatccgcacggccaaggaggccgaactc
gccgtcatcccgggactcggcaccatcaaggcggccaacatcgtgcgcggcctcgccgcc
cgaaaagacgagatcgatcgcctcatcgccgccgggatcgagcccgtcaccctcgccgcc
gagggccccctcgcgagcctcaccttctgcttcaccggctctggcacccgcccgcgcgga
gagctcacccagctcgtggagagcaacggcggccgcgtcctcggctcggtgacgaaggag
ctgaactacctcatcctcgccgaccccagctctgcctccagcaaggccgagaaggcgcgc
aaatacggcaccaagctcatcaccgaagagcagctcgagcagctcatcgaggagcggcgc
aacgccgccggcaacgaaggctga
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