Caulobacter vibrioides NA1000: CCNA_01590
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Entry
CCNA_01590 CDS
T00841
Symbol
ligA
Name
(RefSeq) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03030
DNA replication
ccs03410
Base excision repair
ccs03420
Nucleotide excision repair
ccs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCNA_01590 (ligA)
03410 Base excision repair
CCNA_01590 (ligA)
03420 Nucleotide excision repair
CCNA_01590 (ligA)
03430 Mismatch repair
CCNA_01590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccs03032
]
CCNA_01590 (ligA)
03400 DNA repair and recombination proteins [BR:
ccs03400
]
CCNA_01590 (ligA)
Enzymes [BR:
ccs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCNA_01590 (ligA)
DNA replication proteins [BR:
ccs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCNA_01590 (ligA)
DNA repair and recombination proteins [BR:
ccs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCNA_01590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCNA_01590 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCNA_01590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCNA_01590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
7331568
NCBI-ProteinID:
YP_002516963
UniProt:
B8H5Y7
LinkDB
All DBs
Position
1709381..1711732
Genome browser
AA seq
783 aa
AA seq
DB search
MSQIPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFP
HLVRDNSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV
AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI
EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG
LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV
YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV
GGVSVTNATLHNGDEIARLDVRVGDTVVIQRAGDVIPQIVEVALDARPDPAPPPYEFPHV
CPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFDIEGLGEKQLQA
FFEEGWITEPADIFKLARDAEKLAVLREREGYGETSVANLVKGIEARRTIGMDRMIYGLG
ARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYLELSTAPGVGPKALDMLVEAGK
GGVVADPWPQTDDLELKIGHAVPKLTKPARAALAQRYGTWDAFADGLVAAASGAPGDDYL
HLAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAELDIQPVAKPKTDTAVAGKTIVFTGS
LEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLEL
VAG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccagatccccgtcgccgacctcaccgaagcccaggccgtcgaggacctggagcgt
ctggccgaccttctggcgacgcacgacatcgcctatcaccaagaggacaatccgacggtc
agcgacgccgagtacgacgcgctgaagcggcgaaacctcgatatcgagacgcgcttcccg
catctggtgcgcgacaactccccgtcgatgcgggtcggcgcgacccgggccgagcagttc
gcgccggtggagcacggcgtgccgatgctcagcctcgacaacgccttttcgaacgatgag
gcgatcgagtttgacgcccgcgtccgccgcttcctgcgcatctcgccgtccgagacggtc
gcctacaccgccgagcccaagatcgacggcctgtcggcctcgctgcgctatgagaagggc
gtgctggtccagggcgcgacgcggggcgatgggcgcgtgggcgaggacgtcaccgccaat
ctgcggaccatcgccgacattccgcaccgcctgaagggctcgggttggcccgacgtgatc
gaggtgcgcggcgaggtctatgtcgagcttgcggccttcgccgccttcaacaaggccgcc
gaggaggccggtcagcgcacctatgccaatccccgcaacttcgcggcgggctcgctgcgc
cagatcgacccgaagatcagcgcccagcggccgctgcggttcttcggctatgcctggggg
ctggtgtcggagggcttcgccgacagccagtggggcgcgctggaaaggctggctgaatgg
ggcttcgtgaccacagcgccgcccgcccagcgcgtgctgaacgcgcaaggtctgctcgac
atctacgcccagttcgaggtcctgcgaccgaccctgggcttcgacatcgacggcgtggtc
tacaaggtcgatgacctggagcttcagcgccgtctgggctttgtctcgcgctcgccgcgc
tgggccatcgcgcggaagttcccggcccaacgcgcgcggaccgtgctggaagccatcgat
ctccaggtcggccgcaccggcgcgatcacccccgtggcgcggctgaagcccgtgacggtc
ggcggcgtgtcggtgaccaacgccaccttgcacaacggcgacgagatcgcgcggctggac
gtgcgggtcggcgacaccgtggtgatccagcgggccggtgacgtgatcccgcagatcgtc
gaggtggccctggacgcgcggccagatcccgcgccgccaccgtacgaattcccccatgtc
tgcccatgcccgctgcagacgccgctggcgcgcgaggtcaccgcatcgggccaggagtcg
gtggtgcgccgctgcacgggcgagttcgcctgtccgttccagcgggtcgagcacctgcgc
cacttcgtctcccgccgggcgttcgacatcgaggggctgggcgaaaagcagcttcaggcc
tttttcgaggagggctggatcaccgagcccgccgacatcttcaagctggcccgcgacgcg
gaaaagctggccgtcctgcgcgaacgcgagggctatggcgagacctcggtggccaatctg
gtcaaggggatcgaggcgcggcgcaccatcggcatggatcggatgatctatggcctgggc
gcgcgcgacatcggcgagaccacctccacggtgctggcccgcaacttcgaccgcttcgag
gacctgcaggccgccgccgaggccgccgcgcgggcgctgcccggcgagacctatctggag
ctctcgaccgcgcccggcgtcggacccaaggcgctggacatgctggtcgaggcggggaag
ggcggtgtggtcgccgatccgtggccgcagactgatgacctggaactcaagatcggccac
gcggtcccgaagctcaccaagccggcgcgcgcggccttggcgcagcgctacggaacctgg
gacgccttcgccgacgggcttgtcgccgccgcctcgggggcgccgggcgacgactatctg
catctggccgccatcgatggcgtcggaccggtcgcggcgcagtccctggcgcggttcttc
gccgaggatcataaccggcagaaggtcgccaatctcgtcgccgagctcgacattcagccg
gtggccaagcccaagaccgacaccgccgtcgccggcaagaccatcgtcttcaccggctcg
ctggagaagatgacccgcgacgaggccaaggctcaggccgaagggctgggcgccaaggtc
gcgtcttcggtgtcgaagaagaccgatctggtggttgctggacccggcgccggctccaag
ctgaagaccgccacggacctgggcatccaggtgatgaccgaggacgagtggctggagctt
gtcgccggatga
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