Chryseobacterium cucumeris: JNG87_21425
Help
Entry
JNG87_21425 CDS
T10197
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03030
DNA replication
ccuc03410
Base excision repair
ccuc03420
Nucleotide excision repair
ccuc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNG87_21425 (ligA)
03410 Base excision repair
JNG87_21425 (ligA)
03420 Nucleotide excision repair
JNG87_21425 (ligA)
03430 Mismatch repair
JNG87_21425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccuc03032
]
JNG87_21425 (ligA)
03400 DNA repair and recombination proteins [BR:
ccuc03400
]
JNG87_21425 (ligA)
Enzymes [BR:
ccuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JNG87_21425 (ligA)
DNA replication proteins [BR:
ccuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNG87_21425 (ligA)
DNA repair and recombination proteins [BR:
ccuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JNG87_21425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNG87_21425 (ligA)
MMR (mismatch excision repair)
DNA ligase
JNG87_21425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNG87_21425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DUF7575
UPF0758_N
Zn_ribbon_3
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QRA43144
LinkDB
All DBs
Position
4765236..4767242
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEKLRKELHQHNENYYQLDTPTITDYEFDMLLEELQDLEARYPEFYDENSPT
VRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIEDPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAHFFMRGEIYLTRKNFD
KINRLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISDEVPAETHWELLQ
KAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTDKRTEESREIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYTLTKEQLLP
LERMAEKSAQNIITGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATVE
ELCQVEDIGAKIAVSIVDFFQNSENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaagatagaaaagctccgcaaagagcttcaccagcataac
gaaaactactaccaactggatactcctaccattacagattatgaatttgacatgcttctg
gaggagctacaggatctggaggccaggtacccagagttttatgatgaaaattctcctaca
gttcgggtaggtggtggtgttaccaaggttttccccacgattcagcataaattcagaatg
tattcactggataattcgtatgattttgacgatctggaagactgggagaaacgaatcatc
aaaaccattgaagatcctgtagaatttgttgctgagctgaagtatgacggtgcatccatt
tctattctttatgaaaacggaaaactgtctcaggcggttacgcgtggtgatggtttccag
ggtgatgagattaccccaaacgtgagaaccatttcagatattcctctgactttaaaaggt
gatttccctgctcatttttttatgcgtggtgaaatttatctgaccagaaaaaactttgac
aaaatcaatagactgcgtgaggaagaaggccttgatcccttcatgaatccaagaaatacg
gccagcggaagtttgaaaatgcaggacagcgctgaggtaagaaaacgcggactttcttct
gtattgtatcagtttatttctgatgaagttcctgcggaaacccattgggaactgcttcag
aaagctcagagctggggcttcaaaacctcccagcaggccaaattatgtaaaacaatggct
gaggtacaggagtttatcacgttctgggacacagaacgtcataatctaccatttgaaatt
gatggtattgttttaaaagtcaattcattacaacaacaaagacagcttggctatacggcc
aaatctccccgttgggcaatggcatacaaatttaaagcagaaaaagtagaaacagaactt
cagagtgtctcttatcaggtgggaagaaccggagctattactcctgttgctaatcttaaa
cctgtattactggccggaaccattgtgaaaagagcttctctgcacaatgaagatatcatc
aaaaagctggatcttcatgaacatgatttcgtgtacgtagaaaaaggaggtgaaattatt
cctaaaattgtaggggtaaacacagataaaagaacggaagaaagcagagaaattgaatat
atcaaacattgtcctgaatgtggtaccgagctggtaaaaattgaagatcaggccatccat
ttctgtccgaatgagcttcactgtccgccacaggtagtaggaagaatgattcactatgtt
tccagaaaagctttgaatattgataatcttggaagtgaaactattgaacagctgtacaga
gaaaaactgattgaaaatcctgctgacttctatactttaacaaaagaacagctccttccg
ttggaaagaatggctgaaaaatctgcccagaatatcatcacaggaattgaaaaatccaaa
gagattccttttgaaaaggtattgtatgggattgggattaagcatgtgggagaaacggtt
gccaagaaactggttaaaaacttcccgacgattgaagaattgaaaaatgcaaccgtagaa
gagctttgtcaggtagaagatatcggagctaaaattgcagtgagtattgttgatttcttc
cagaattctgaaaacgtgttgatgatcgagcgattgaaatcttacggagtacagcttgaa
aaaggagaaagtaccaatgaggttctatccaatgttctggaaggaaaaactttcctgttc
accggaaaattgtcattattcaccagagaatctgcagaagaaatggtagaaaagcatggt
gggaaaaatatttctgcagtttcaaaaaacctcaactatcttgtagtaggtgaaaaagca
ggaagcaagctgaaaaaagcacaggatatcggaacaattgaaattctggatgagcagcag
tttctggatctgattgaaaagcagtaa
DBGET
integrated database retrieval system
