KEGG   Corvus cornix (hooded crow): 104683307
Entry
104683307         CDS       T03546                                 
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03018  RNA degradation
ccw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104683307 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104683307 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccw03019]
    104683307 (LSM3)
   03041 Spliceosome [BR:ccw03041]
    104683307 (LSM3)
Messenger RNA biogenesis [BR:ccw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104683307 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104683307 (LSM3)
Spliceosome [BR:ccw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104683307 (LSM3)
 Complex C
  U2 snRNP components
    104683307 (LSM3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 104683307
NCBI-ProteinID: XP_010388410
LinkDB
Position
12:10778252..10781361
AA seq 102 aa
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggatgaggtggaccagcaacaaacaacaaatactgtagaggagccacttgatctc
atcagactcagtctagatgagcgaatctatgtcaaaatgagaaatgacagagagcttaga
ggcagattacacgcatatgatcagcacttaaatatgattttgggtgatgtggaagaaact
gtgactacaatagaaattgatgaagaaacctatgaagaaatttataaatctaccaaaagg
aatattccaatgctctttgtcagaggggatggtgttgtgcttgtagctcccccgttgagg
gttggttga

DBGET integrated database retrieval system