Corvus cornix (hooded crow): 104683307
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Entry
104683307 CDS
T03546
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03018
RNA degradation
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104683307 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
104683307 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104683307 (LSM3)
03041 Spliceosome [BR:
ccw03041
]
104683307 (LSM3)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104683307 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
104683307 (LSM3)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104683307 (LSM3)
Complex C
U2 snRNP components
104683307 (LSM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
104683307
NCBI-ProteinID:
XP_010388410
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All DBs
Position
12:10778252..10781361
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AA seq
102 aa
AA seq
DB search
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaggtggaccagcaacaaacaacaaatactgtagaggagccacttgatctc
atcagactcagtctagatgagcgaatctatgtcaaaatgagaaatgacagagagcttaga
ggcagattacacgcatatgatcagcacttaaatatgattttgggtgatgtggaagaaact
gtgactacaatagaaattgatgaagaaacctatgaagaaatttataaatctaccaaaagg
aatattccaatgctctttgtcagaggggatggtgttgtgcttgtagctcccccgttgagg
gttggttga
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