Corvus cornix (hooded crow): 104684025 Help Entry 104684025         CDS       T03546                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ccw  Corvus cornix (hooded crow) Pathway ccw04115   p53 signaling pathway ccw04145   Phagosome ccw04148   Efferocytosis ccw04350   TGF-beta signaling pathway ccw04510   Focal adhesion ccw04512   ECM-receptor interaction ccw04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ccw00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     104684025 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104684025 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     104684025 (THBS1)    04148 Efferocytosis     104684025 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     104684025 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     104684025 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104684025 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ccw04131]     104684025 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccw00536]     104684025 (THBS1) Membrane trafficking [BR:ccw04131]  Endocytosis   Phagocytosis    Opsonins     104684025 (THBS1) Glycosaminoglycan binding proteins [BR:ccw00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104684025 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C cEGF EGF_3 TSP1_ADAMTS TSP1_CCN Laminin_G_3 EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  104684025 NCBI-ProteinID:  XP_039408147 LinkDB All DBs Position 5:32507902..32523812 Genome browser AA seq 1245 aa AA seqDB search MRAIPLKPRAAAGARSVPAAPPQLPPAARLSAPGQSGPPVDIGRRYPEAGADRPDRSSRR LIQRQTFAMGPATALCLLLLVLGGSETKRTAESRSDDNSVFDLFELIGFMRKGAGRRAPG VYLVKGPESSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLL SVEQKDGSGHVFSLVSNGKAGSLDLSLSGDGKQQLVSVEDVLLATGHWKNITLFVQEDRA QLYVGCEKMENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLET ILRNKGCSSSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQG LRSMVTTLQDRVRKVTEENEIIAKVVQITPGACIHNGILHKNKEEWTIDSCTECTCQNSA TICRKVSCPLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRS CDSLNNRCEGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSP VPQLNGKPCEGEARENKACQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQ YGGKTCVGEARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIH CQDIDECKEVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMSNKQVCK PRNPCTDGTHDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVC VANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPFIYNPQQYDY DRDDVGDRCDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTD LDGVGDQCDNCPLEHNPDQEDSDSDRIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADH DKDGKGDACDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDI CPENVEISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNA VDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKV VNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVM YEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP NT seq 3738 nt NT seq  +upstreamnt  +downstreamnt atgcgagccatccctttaaagccgcgcgcggcggccggcgcccgcagtgtcccggcagcg ccgccacagctgcctccagctgctcgcctttccgcgccgggacagtcgggaccgcccgtg gatattggtcgccggtacccggaggccggcgctgaccgcccggatcgctcttcccgcaga ctgattcagagacagacctttgccatgggaccggcgactgctctctgcctccttctcctc gtgctcggcggctcagagaccaagcgcactgcagagtccaggagtgatgataacagtgtc ttcgatctctttgaactcattggcttcatgcggaagggagctgggcgccgggcccccggg gtgtacctggtgaagggaccagaatcctccagccctgcttaccgcattgaagatgccagt cgcatccctgctgtccctgactcaaagttccaagacttattagatgccatccatgctgag aagggcttcattctcctggccactcttcggcaagccaagaaaagcagaggcacactgctc tccgtggaacagaaagatggctctggtcatgtcttcagtctagtgtcaaatggcaaggca ggctccctggacctgagcctttctggtgatggcaagcagcagttagtgtcagtagaggat gtcttgctagctacaggacactggaagaatatcaccctgtttgtgcaggaggaccgagct cagctctatgtggggtgtgagaaaatggagaatgctgaactggacatccccatccagaac atcttcactagggacctggccagcagtgccaggctccgtattgccaaagggggagtcaat gacaacttccagggtctgctgcagaatgtgcggtttgtctttggaacaactctggaaact atcctgcggaacaaaggctgctccagctccactagtgcaatcattactttggacaacccc atcaatggttccagcccagctatccgcactaactacattggccataaaacaaaggacatc caagcagtctgtggattttcctgtgatgaactaacaaatatgtttgtggaactgcaaggg ctgcggtccatggtcacaacacttcaagacagagttcgcaaagtgactgaagaaaatgaa atcattgccaaagtagtccagatcactcctggggcatgcattcataatggaatcttgcac aaaaataaagaggagtggactattgacagctgcactgaatgtacttgccagaactctgcc accatatgccggaaagtgtcctgtcctctcatgccttgttccaatgccaccgtgcctgat ggcgagtgctgccctcggtgctggcctagcgactatgcagatgatggatggtctccttgg tctgagtggacctcatgttctgtgacctgtggtaacgggattcagcagagagggcgttcc tgtgacagtctcaataaccgctgtgaaggctcctctgtacagactcggacttgccacctt caagagtgtgataagagatttaaacaggatggtggctggagtcactggtccccatggtca tcatgttctgtcacttgtggcacgggcatcatcactagaattcgtctctgcaactctcca gtaccacagctgaatggcaaaccttgtgagggtgaagcaagagaaaacaaagcctgtcag aaagatccttgcccaattaatggcaattggggaccatggtctccatgggatgcttgcaca gtgacatgtggaggaggacttcagaaacgtagccgtctctgcaataatcccgagcctcag tatggtgggaagacttgtgtaggtgaagctagagggactcaggtctgcaacaaacaggac tgtccgattgatgggtgtctgtctaatccctgctttgcgggggctacatgtaccagcgcc cctgatggttcctggaagtgtggtgcctgtcctgctggctaccatggtgatggtattcac tgccaagatattgatgagtgcaaagaggttcctgatgcctgctttgtcttcaatggagtg cacaggtgtgagaatactgaacctgggtacaactgtctgccttgtccaccacgtttcact ggaacacagccctttggccgcagtgttgaggatgccatgagtaacaaacaggtctgcaag ccacgtaacccatgcacagatggaacacatgactgcaacaagaatgccaaatgcaattac cttggccacttcagtgaccccatgtatcgctgtgaatgtaaaccaggctatgctggcaat ggtataatctgtggagaagacacagacttagatggatggccaaatgagaacctggtttgt gttgccaatgccacttaccactgtaaaaaagataactgccctaatctgcctaactcaggg caggaagactatgataaggatgggattggtgatgcctgtgacaatgatgatgatgatgat ggcattcctgatgaccgggacaactgtccattcatctacaacccacagcagtatgactac gacagggatgatgttggtgaccgctgcgacaactgtccctacaatcacaaccctgatcaa actgacactgacaacaatggagaaggagatgcatgtgcaatagatattgatggagatggg gtgcttaatgaaagggacaactgccaatatgtctacaatgtagaccagagggatacagac ttggatggtgttggagatcagtgtgataactgtccactggaacacaaccctgaccaggaa gacagtgattctgatcgcataggtgatcagtgtgacaacaaccaggacatagatgaagat ggccatcaaaataaccttgataactgcccctatgtgcccaatgccaatcaagctgaccat gataaggatggaaaaggtgatgcctgtgaccatgatgatgacaatgatggtatccctgat gacaaagataactgcagattggttgccaacccagatcaagctgattctgatggtgatgga cgtggagatgcttgcaaagatgattttgaccaagacagtgtgccagacattgatgatatc tgccctgaaaatgtggaaattagtgagactgatttccgaagatttcagatgattcccctg gatcccaagggaacatcccaaaatgatccaaactgggttgttcgtcaccagggtaaagaa ctggttcagacagtcaactgtgaccctggccttgcagtcggttttgatgaattcaatgcc gtggacttcagtggtaccttctttatcaatacagaaagggatgatgattatgctggcttt gtatttggctaccaatctagcagtcgtttctatgttgtcatgtggaagcagatcacccag tcttactgggactccacaccaaccaaagctcaaggatattcaggtctctccatcaaagtt gtgaattccaccactggtccaggagaacaccttcgtaatgctctgtggcacacaggaaac actcctggccaggtgagaactttgtggcatgatcctcgtcacataggctggaaagacttc actgcatacagatggcgacttagccatagaccaaagactggctacatcagggttgtaatg tatgaagggaagaaaatcatggcagactcaggaccaatctatgataaaacctatgctggt ggtcggctaggattatttgtcttctctcaagaaatggtgttcttctcagaccttaaatat gaatgcagagatccataa

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