Corvus cornix (hooded crow): 104687302
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Entry
104687302 CDS
T03546
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccw03036
]
104687302 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104687302 (SMCHD1)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104687302 (SMCHD1)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104687302 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
104687302
NCBI-ProteinID:
XP_039405215
LinkDB
All DBs
Position
2:complement(104691518..104761062)
Genome browser
AA seq
2032 aa
AA seq
DB search
MAAAAGGGRAPRRPALLTPRGNGDRTVFLFDRRREQADPDEKVLRYGKDNYRAFRSAVCQ
AFGIASDEKFVITTTNRKEITEDNFSDLVRDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTGFIQNRKPSDSTHITSDD
ERFLHNLISEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNEA
NAVTKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKECHEKYDKQIKFTVFKGITVRSDIPSKRMQSPWTTYAA
IEWDGKTYKTGQLVKTTKTHPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNDTRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
NIPLELQDEFGHPTHLTTRLRPILEASGLTLKHEDIPVATKCIIKGVTAKGCINSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQMLKARIEVLNCRDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEITCVAGHVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLVAGSPAKLQFVD
WPELEKQQPVAVINGRELQRPLIVQLCDQWGNPAPESNVKISLTKSNNLKIVPSNLQHKT
DDTGRANLGVFSIHAPRGEHILQLKASYNMAILDCLVITIKVLPDPEKPVCLNVKYDKSP
SFPAGGTFPDFMVSVLSEDDTIIKNINPARISMKMWEAQNSRVRTPIDVTTFSCSKVKDD
KEDGFFYFRDKVVPERVGTYIVQFTFAMDKTNMLNSEQIIVEVVPNDPVRLLPDSLPATP
AVSNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIAKIKSPNEEDIEIPQFQGKVNT
VEFPLESGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKTPLEPYCLSFMFYNDSKKQQ
LMATLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAETREALLRSELKKHQIELPP
TNILQYVDSLLKKKMSEQEGVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVI
SWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWSRPLPHLRNGRTFF
RPVGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLT
REGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVVKLDN
VNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPIMLDI
SDTPIPPKRMRRETVKKLYSSEEWISSGKQQQQPVLQMTPSELNGTPRKRKA
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggcgggaggcggccgcgcacctcgcaggccggcgctgctgacccctcgc
ggcaacggggaccgcaccgtgttcctcttcgatcggcgccgggagcaggcggacccggac
gagaaagtgctccgctacggcaaggacaactaccgcgctttccgcagcgccgtctgccag
gcatttggcatagcttctgatgaaaagtttgttatcaccacgacaaataggaaggaaatt
acagaagataacttcagcgaccttgttcgagatggagttactttgtatctgctgcagtca
gttgatcagatgttgcttttggcaaccaaggaacgaattgactttctgcctcactacgat
acgcttgtcaaaagtggcatgtacgaatactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgagttgattgacaattctctgtcagctacatcccgaaatactggtatt
cggagtatacagataaaattgttatttgatgattcccaaggaaaaccagctgttgctgtg
atcgataatggaagtggaatgacttctaaacagcttaacaactgggctgtttatagattg
tcaaagtttacaagacaaggtgactttgaaagtgatcattcaggatatgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatttcgtatttcggagttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcagcatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcaaaacagaaagccatctgactctactcacatcacaagtgatgat
gaaagatttcttcataatctaatatcagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatttatcactattatatccatggaccgaaaggaaatgaagct
aatgctgtaacaaaagacataagccctttcaacaacatcgacattcagatttcaatgttt
gaaaaaggaaaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagacagttttgagtttaaggcacatgttgaagaagaaggt
atagttgaaggtatcatccgataccatcccttcctgtatgataaagaaacataccctgat
gatccatgttttccatcaaggttaaatgatgatgatgatgatgactgctttatagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgcttttggaatggaagattaatacca
tacacaactgtggaagattttgactggtgtgctcctccaaagaagagaggattggcacca
attgagtgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaatactctgttc
acgagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagagtgtcatgaaaaatacgacaaacagataaaattcacagtctttaaaggaata
actgtacgtagtgatataccatccaaaagaatgcagagcccttggacaacgtatgctgca
atagagtgggatggaaaaacatacaaaactgggcagctggtgaaaaccactaagactcat
ccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggggatata
tttgccactggaggagaggttcaaattgctttggaaccacaagcattgtatgctgaaaca
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
atagaggatgaaatggcaaggcttcctgacaaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgatacaagatttgctggtacaccaataggagcgttaagaatagaa
attttgaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattttgcattcacctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaagtggccgtactggtttaaaaaaatggaaaat
cttcagaaacttggtaactactccttgaaactgcaagtagtattgaatgaaagtaatgca
gacacttatgcaggaaggcctctaccatctaaagtatttaaatttactattgtagagggc
aaaccagagaaatttttggtgggtcttttggagcttccttttcgaattggagtacctttt
aatattcctttggaactgcaggatgaatttggtcatccaacgcacttgacaactcgcctt
agaccaattctggaagctagtggattaacattgaagcatgaagacatacctgtggcaaca
aagtgtatcattaagggtgttactgctaaaggctgtataaatagttgccaaggcaagaat
tttaatctgaagattactcttcctggtttaaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcgtcagttgaaagtaaaaccagattcagaaattctgaagatt
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gcacagccagagctgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggtccagttatacatgtacag
aatatcaagaaagaccagatgctgaaagcaaggattgaagtacttaattgcagagatgtg
ccaccagtagaaaagatcataaagcttcttcctagcagtcatgttgcaagactacaggtc
ttaagtatgaacggacaaaaagctcttcagattaaacatcaggatgaaatcacttgtgtt
gctggccatgtcatgaacaaacttatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaaatcaaggttaactggacacccaaaattgacaga
gagctgttgatgcagggattattacctgatgtaaaagtaccgacctcagtaaaagatgta
cgttactgtctaattacttaccttgatgagcacgtgtctttggagagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggatcaaacacactg
cagatgggtgaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattctctaggagtttctgggcctggactt
gataaatcaaatttgaaagtaacttggcaggaaagtactcaaacaatgaaagtaaaaggt
attagatataaaccctgtttacttggaagcaaagaattgtgcttcgcttggcgtgaattt
tctgactttatcagagtgaatttagtagcaggatcccctgctaaattgcagtttgtggat
tggccagagttagaaaagcaacagcctgttgcagtgattaatggtagagaattgcagagg
ccccttattgttcagttgtgtgatcagtggggaaatccagctcctgaatctaatgtgaaa
atcagccttacaaagagtaacaacttaaagattgttccttcaaacttgcaacataaaaca
gatgacactggtagggctaacctgggagtttttagtattcatgcacctaggggagagcac
attttacagcttaaagcctcatacaacatggccatattagattgtcttgtaatcacaata
aaagtcctgcctgatcctgagaaacctgtctgcttgaatgttaaatatgacaaaagtcct
tcttttccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgac
accattattaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagaac
agccgggttaggacaccaattgatgttacaacgtttagctgtagtaaagtgaaggatgac
aaagaagatggcttcttctacttcagggataaagtggttccagagagagtgggcacttac
attgtccagtttacctttgcaatggataagacaaatatgctcaacagtgaacagattata
gttgaagttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactcca
gcagtttccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccat
ttaatggatgaatacaacaaccacactggacttgatctagttggcagaataatagcaaaa
atcaaaagccccaatgaagaagatatagagatcccacagtttcaggggaaggtcaataca
gtagagtttccattggagagtggatcagctgaaattaatttagtgctggctgaagacagt
cctggaagagatagcactgaatatattcttgtctttgagccacacctgccagctttgaaa
acacctttggaaccttattgtctctcatttatgttttacaatgattccaagaagcagcag
ctgatggcaacactgacaagggagaaagaccaattatctaagtctatagatctttacaga
aagatgtttgatactaccaaccagctcgtagctgaaatgaaatgtcaggttaaagaagct
gaaacaagagaagctctcttgaggagcgaactgaagaagcaccaaattgaattaccaccg
acaaacatacttcagtatgtggattctcttcttaaaaaaaagatgtcggaacaagaagga
gtaatgaagcagccaaggagaacttgtaccctcccaaactatccaaaaggcaaccaggat
attctaggcaagattgcacatttagctcaaattgaggataacgaagcagcaaaagttatc
tcttggcacctggcaagtgacatggactgtgtggtcacactgaccacggaagccgctcgt
tctatctttgatgaaactcaaggtcgacaacaagtgttaccccttgattctatttacaag
aagacactcccagattggagcagacctttacctcacttaagaaatggaagaaccttcttc
agacctgttggaaatccagtgtttgccagagatctgttaacatttccagataacatagag
cattgtcaaacagtgtttggtatgctcttgggtgacactatcattatagataacttggat
gctgccaaccactacagaaaagaggttgtgaaaattacacactgccctaccttgctgact
agggaaggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcct
ccaatggacaaactcagaggaatggtatttggagcaccaatgccaaaactttactctact
ttttctggacagatagatcttcttcagcaataccgtgcagcagtggttaaacttgataat
gtgaataaggaccttgacttacatttgcagtcactgaacactccagaaatgcaaaagaaa
aaacaggaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatg
actcctgctttatcagataaaggtgctgaatcattacttcaacctataatgttagatata
tctgacacccccattcctcccaaaagaatgcgaagagagacagtgaaaaaattgtatagc
tcagaagaatggatctcttctggaaagcagcagcagcagccagtgctacaaatgacccct
tcagaacttaatggaactccacgaaaaagaaaggcatag
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integrated database retrieval system
