Corvus cornix (hooded crow): 104688702
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Entry
104688702 CDS
T03546
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X5
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104688702 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104688702 (KDM2B)
04121 Ubiquitin system [BR:
ccw04121
]
104688702 (KDM2B)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104688702 (KDM2B)
Enzymes [BR:
ccw01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104688702 (KDM2B)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104688702 (KDM2B)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104688702 (KDM2B)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104688702 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104688702 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
JmjC
Cupin_8
LRR_4
LRR_At5g56370
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104688702
NCBI-ProteinID:
XP_019140753
LinkDB
All DBs
Position
15:complement(3044559..3152587)
Genome browser
AA seq
1088 aa
AA seq
DB search
MYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEEWVLSGKQSDIF
LGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDR
TRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQKESMLIDAKRKRSTDSYSSDSW
LDMDEESCDAHLQEEKDDSVDKNSRSLVDGSSSPNSTHSEGKEAAGRKQKATVMRYLKRT
LSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKC
VPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTTKNRAVGRPKGKLGAAS
AVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIA
PVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPGCLKVKESDGVVNDEL
PNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKINRDNKEVPDAAKRKGDC
EETPRRKSEEHSKKAPVESILRRKSDEVHLWRKRKFEKSQEPTMRKRRRSWKAPDDRTAM
IKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPN
KELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEPKRALNNSERLHRFSKGLNG
TPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAA
HVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGII
RRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQW
AEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKEQFCGSCHIRPDFGSGQIDN
RSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRD
SLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVE
EKLLQKLS
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgattttggtggc
acttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccacctact
ctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgatatcttt
ctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacgttcttc
attccttcagggtggatacatgcggtttatactccagtagattctctggtgtttggtgga
aatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgaggacaga
acaagggtgcatgccaaattccggtatcctttctactatgaaatgtgctggtatgttctg
gagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccagaaagaa
tcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagattcgtgg
ttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgacagcgta
gataagaactccagatccttggtggatggctcctcctcacccaacagcacgcactcggaa
gggaaggaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaaagaact
ttgtctaatgagtcagatgacagcgtaaaatcaacaaccccgacggactatcccaaaaca
cccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaatttgaa
ctgaaaggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgt
gttccagaaggcattgaagacccacaggctctcctggaggacatgaagaacatactgaag
gaacacgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagctggccc
aagaagaccacaaagaacagggcagtcgggcggcccaaggggaagctgggtgctgcctct
gcggtgaagctcgcggccaaccggagcacggcgggcgcccggcggcggaggacgcgatgc
cgcaagtgcgaggcgtgtctgcggacagagtgcggcgagtgccacttctgcaaggacatg
aagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgcatcgct
ccggtgctgcctcatactgctgtgtgtctggtgtgcggagaagctgggaaagaggacact
gtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgtaatgaa
atcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgatgagctg
ccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcgtacaag
caaaagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctgaaggag
cagaaaattaacagagacaacaaggaagtgccagatgctgccaaacggaaaggggactgt
gaggagactcccaggcggaaatcagaggaacattccaaaaaggctccagttgagtcaatc
ctgaggagaaagtctgacgaagtgcatctgtggaggaaacggaaattcgagaaatcccag
gaacccacgatgagaaagcggcggcgatcgtggaaggccccggatgaccgaactgccatg
atcaaacccctgaggcgcctcaagcaggagcccgaggatgagctgccagaagcacccccc
aggtccaaggatagtgaccagtctcggtcgagctcgcccacagcagggcccagcacggag
ggtgccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggcttcccaat
aaagaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaac
agccttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaacgaggaa
cccaagcgtgcgttgaacaacagcgagagactccataggttcagcaaagggttgaacggg
actccccgggagctgagacaccaccagctcatgcccagcctgcgcagcaccccccgggga
atagcccggcccccgccctcgctgtcgccccccaaatgcatccagatggagcggcacgtg
atccggccacctcccatcagcccccctccggactcgctccccctggatgacggggcagcc
cacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttg
tgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatgg
accaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcattatt
aggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagt
tggcttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggata
gcagtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtgcagtgg
gcagaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggacaaccgg
ccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcagggaag
gagcagttctgtgggtcatgccacattcgcccggatttcggctcaggtcagatcgacaac
cggagtaagctacggaacatcgtggagctgcgcctggccggcctggatatcacagatgct
tcgctgcggctgatcatcaggcacatgcccctgctctccaaactcaatctcagttactgt
aaccacgtgacagatcagtctattaacctgctgaccgccgttggaaccaccacgcgggat
tcgttaacggaaattaatttatcagactgcaataaggtcactgatcagtgcctgtcttac
ttcaaacgttgtgggaacatctgccagatcgacctgaggtactgcaagcaagtgacgaag
gagggctgcgagcagttcatagcggagatgtccgtaagcgtccagttcgggcaggtggaa
gaaaaacttctgcaaaaactgagttag
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integrated database retrieval system
