Corvus cornix (hooded crow): 104693976 Help Entry 104693976         CDS       T03546                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism ccw  Corvus cornix (hooded crow) Pathway ccw04010   MAPK signaling pathway ccw04120   Ubiquitin mediated proteolysis ccw04140   Autophagy - animal ccw04144   Endocytosis ccw04620   Toll-like receptor signaling pathway ccw04621   NOD-like receptor signaling pathway ccw04622   RIG-I-like receptor signaling pathway ccw05132   Salmonella infection ccw05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:ccw00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     104693976 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     104693976 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     104693976 (TRAF6)    04140 Autophagy - animal     104693976 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     104693976 (TRAF6)    04621 NOD-like receptor signaling pathway     104693976 (TRAF6)    04622 RIG-I-like receptor signaling pathway     104693976 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     104693976 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     104693976 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ccw04131]     104693976 (TRAF6)    04121 Ubiquitin system [BR:ccw04121]     104693976 (TRAF6) Enzymes [BR:ccw01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      104693976 (TRAF6) Membrane trafficking [BR:ccw04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     104693976 (TRAF6) Ubiquitin system [BR:ccw04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     104693976 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF SlyX PspA_IM30 Med21 RING_XB3-XBAT31 TRAF3_RING zf-RING_11 DUF16 DUF4455 HAP1_N CENP-F_leu_zip U-box CEP104_ZnF ATG16 Spc29 Myosin_tail_1 UPF0242 DUF1664 HMMR_N PUMA_CC ADIP DM zf_UBZ Motif Other DBs NCBI-GeneID:  104693976 NCBI-ProteinID:  XP_039408527 LinkDB All DBs Position 5:43893835..43916974 Genome browser AA seq 545 aa AA seqDB search MSLLHSDSSCGARDGDSGCCAAMASACSAGAKEESSSVGSSAGNPPSSFSEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTVECPQCQGTFPKNHLKEHMTQ ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFEPAL FSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRSL EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQNLKQRTFIKDDTLLVRCEVLTRLDLNSVRREGFQARS TDGAM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctgcacagtgacagcagctgtggagcccgagacggggacagcggctgctgc gcagccatggccagcgcctgcagcgcgggagccaaggaggagagctccagcgtcggcagc agcgctggcaacccgcccagctctttctcagaggagacacaaggatacgacgtggagttc gatccgcccctggaaagtaaatatgagtgtcccatctgtctgatggctctccgggaagca gtgcagaccccgtgtggccaccgtttctgcaaaggctgcattgtcaaatcaatcagagat gcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaactttttcctgac aacttcgccaaacgggaaatcctttcattaatggttaagtgtcccaacaagggctgcagt atgaagatggagctcaggcacttagaggaccaccagctgcagtgtgatttttccactgtg gaatgcccacagtgccaaggaaccttcccaaagaaccatctgaaggagcacatgacccag gagtgtccaaggcgccaagtgtgttgcccaaactgtgccacatctatggcctatgaagat aaagagcttcatgaccaaacctgcccacttgccaatgtattttgtgaatattgcaacaca gtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccggta ccatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggcacga catatgcaggagttcactcaggttcacatgagaatgatggctcagagtttccagaacatt agtgtcactgctgcaaatcctgtacccttcatcaatggcctacccttcgagcctgccctc ttctcacatgtgtcacatgctgcatatgactgcaatccagaagttgaaaacttcaaggaa actattcagcagttggaaggtcgtctggtaagacaagatcaccaaatcagggaactcatt gctaaaatggagactcagaacactcacatggcagaactcaaacgtactatccgaagcttg gagggaaagattactgaaatggaggcacagcaatgtaatggtatttatatctggaagatt gagaacttcagtggactgcagaaagcccaggaagaagagagacctgtagtgatgcacagt cctggcttctatacggggaagcctggctacaagctgtgcttgcgcctgcatatccagtta ccaaatgctcagcgctgcgctaattttatctctctgttcgtccacactatgcaaggggaa tatgacagccacctgccctggcctttccaaggcaccatacgactttctattttggatcaa tcagaagggccggaaaggcagaaccatgaagaggtgatggaagccaagccagagctactg gctttccagagaccgacaattcaccgcaatcccaaaggttttggttatgtgactttcatg cacctgcagaacttgaaacagagaaccttcatcaaggatgacacgctcctggtgcgctgc gaggttctaacgcgcctggacttgaacagtgtccgcagagaaggcttccaggcccgcagt actgatggagccatgtag

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